A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2133.6
nTPM
Monaco:
323.9
nTPM
Schmiedel:
288.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2133.6
HPA sample
nTPM
Classical monocyte nTPM: 2133.6
Samples: 6
Max nTPM: 3135.4
Min nTPM: 1398.3
P10809_1003
3135.4
P10809_1020
1666.1
P10809_1039
2299.1
P10809_1058
1855.5
P10809_1080
1398.3
P10809_1107
2447.4
Intermediate monocyte nTPM: 1751.1
Samples: 6
Max nTPM: 2863.3
Min nTPM: 1110.8
P10809_1004
1306.6
P10809_1023
1986.7
P10809_1042
1709.2
P10809_1061
1110.8
P10809_1081
1530.1
P10809_1108
2863.3
Non-classical monocyte nTPM: 1680.5
Samples: 5
Max nTPM: 2492.4
Min nTPM: 1045.4
P10809_1005
1463.9
P10809_1053
1819.3
P10809_1072
1045.4
P10809_1082
1581.4
P10809_1109
2492.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
323.9
Monaco sample
nTPM
Classical monocyte nTPM: 213.6
Samples: 4
Max nTPM: 274.5
Min nTPM: 177.7
RHH5313_R3680
274.5
RHH5221_R3593
179.3
RHH5250_R3622
177.7
RHH5279_R3651
223.0
Intermediate monocyte nTPM: 323.9
Samples: 4
Max nTPM: 376.1
Min nTPM: 195.0
RHH5314_R3681
350.8
RHH5222_R3594
373.7
RHH5251_R3623
376.1
RHH5280_R3652
195.0
Non-classical monocyte nTPM: 236.6
Samples: 4
Max nTPM: 305.2
Min nTPM: 131.2
RHH5315_R3682
305.2
RHH5223_R3595
243.8
RHH5252_R3624
266.2
RHH5281_R3653
131.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
288.3
Schmiedel sample id
TPM
Classical monocyte TPM: 288.3
Samples: 91
Max TPM: 389.8
Min TPM: 206.2
MONOCYTES_1
389.8
MONOCYTES_2
384.4
MONOCYTES_3
344.9
MONOCYTES_4
342.5
MONOCYTES_5
341.5
MONOCYTES_6
340.6
MONOCYTES_7
333.5
MONOCYTES_8
331.4
MONOCYTES_9
331.3
MONOCYTES_10
328.8
MONOCYTES_11
328.5
MONOCYTES_12
323.5
MONOCYTES_13
322.9
MONOCYTES_14
322.8
MONOCYTES_15
322.5
MONOCYTES_16
322.5
MONOCYTES_17
322.4
MONOCYTES_18
321.3
MONOCYTES_19
321.0
MONOCYTES_20
319.4
MONOCYTES_21
314.0
MONOCYTES_22
312.0
MONOCYTES_23
311.1
MONOCYTES_24
309.8
MONOCYTES_25
306.4
MONOCYTES_26
305.2
MONOCYTES_27
304.1
MONOCYTES_28
303.7
MONOCYTES_29
303.3
MONOCYTES_30
303.1
MONOCYTES_31
302.2
MONOCYTES_32
301.8
MONOCYTES_33
301.6
MONOCYTES_34
301.0
MONOCYTES_35
300.3
MONOCYTES_36
300.1
MONOCYTES_37
299.4
MONOCYTES_38
298.6
MONOCYTES_39
297.1
MONOCYTES_40
296.7
MONOCYTES_41
296.0
MONOCYTES_42
295.5
MONOCYTES_43
295.2
MONOCYTES_44
294.0
MONOCYTES_45
294.0
MONOCYTES_46
290.8
MONOCYTES_47
290.5
MONOCYTES_48
289.0
MONOCYTES_49
287.5
MONOCYTES_50
287.0
MONOCYTES_51
286.6
MONOCYTES_52
286.5
MONOCYTES_53
286.4
MONOCYTES_54
283.9
MONOCYTES_55
283.8
MONOCYTES_56
278.1
MONOCYTES_57
276.3
MONOCYTES_58
276.0
MONOCYTES_59
276.0
MONOCYTES_60
275.2
MONOCYTES_61
274.4
MONOCYTES_62
270.2
MONOCYTES_63
264.4
MONOCYTES_64
264.1
MONOCYTES_65
264.0
MONOCYTES_66
263.4
MONOCYTES_67
263.1
MONOCYTES_68
262.1
MONOCYTES_69
261.7
MONOCYTES_70
260.1
MONOCYTES_71
259.0
MONOCYTES_72
257.9
MONOCYTES_73
257.6
MONOCYTES_74
256.7
MONOCYTES_75
255.4
MONOCYTES_76
254.1
MONOCYTES_77
253.4
MONOCYTES_78
252.9
MONOCYTES_79
249.3
MONOCYTES_80
247.9
MONOCYTES_81
247.9
MONOCYTES_82
244.6
MONOCYTES_83
240.2
MONOCYTES_84
237.2
MONOCYTES_85
236.7
MONOCYTES_86
235.1
MONOCYTES_87
229.5
MONOCYTES_88
225.4
MONOCYTES_89
223.7
MONOCYTES_90
219.5
MONOCYTES_91
206.2
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Non-classical monocyte TPM: 233.5
Samples: 90
Max TPM: 349.9
Min TPM: 146.4
M2_1
349.9
M2_2
326.5
M2_3
287.9
M2_4
287.0
M2_5
285.8
M2_6
279.8
M2_7
278.6
M2_8
275.0
M2_9
273.2
M2_10
273.0
M2_11
271.4
M2_12
271.1
M2_13
267.0
M2_14
265.7
M2_15
260.6
M2_16
258.6
M2_17
257.6
M2_18
256.3
M2_19
255.9
M2_20
255.3
M2_21
255.1
M2_22
254.6
M2_23
253.3
M2_24
253.1
M2_25
251.2
M2_26
249.1
M2_27
247.9
M2_28
247.7
M2_29
246.2
M2_30
246.1
M2_31
245.4
M2_32
245.1
M2_33
244.5
M2_34
242.7
M2_35
242.6
M2_36
240.3
M2_37
240.1
M2_38
240.0
M2_39
239.8
M2_40
238.8
M2_41
238.2
M2_42
238.1
M2_43
237.7
M2_44
236.9
M2_45
236.6
M2_46
232.8
M2_47
232.2
M2_48
231.6
M2_49
231.6
M2_50
231.3
M2_51
230.7
M2_52
229.6
M2_53
229.4
M2_54
228.9
M2_55
228.1
M2_56
228.1
M2_57
225.8
M2_58
224.2
M2_59
223.9
M2_60
218.8
M2_61
218.6
M2_62
218.0
M2_63
217.0
M2_64
215.4
M2_65
214.5
M2_66
213.9
M2_67
211.9
M2_68
211.3
M2_69
210.7
M2_70
209.9
M2_71
205.5
M2_72
204.2
M2_73
203.7
M2_74
203.4
M2_75
201.3
M2_76
197.6
M2_77
196.1
M2_78
195.3
M2_79
194.5
M2_80
192.1
M2_81
189.0
M2_82
187.1
M2_83
187.1
M2_84
186.7
M2_85
186.1
M2_86
183.4
M2_87
180.9
M2_88
180.8
M2_89
177.5
M2_90
146.4
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