A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2157.0
nTPM
Monaco:
187.8
nTPM
Schmiedel:
366.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2157.0
HPA sample
nTPM
NK-cell nTPM: 2157.0
Samples: 6
Max nTPM: 2831.5
Min nTPM: 1255.0
P10809_1013
1895.4
P10809_1033
2663.4
P10809_1052
2086.6
P10809_1071
2831.5
P10809_1093
1255.0
P10809_1103
2210.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
187.8
Monaco sample
nTPM
NK-cell nTPM: 187.8
Samples: 4
Max nTPM: 213.8
Min nTPM: 143.7
RHH5316_R3683
201.8
RHH5224_R3596
143.7
RHH5253_R3625
213.8
RHH5282_R3654
191.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
366.2
Schmiedel sample id
TPM
NK-cell TPM: 366.2
Samples: 90
Max TPM: 616.7
Min TPM: 227.8
NK_1
616.7
NK_2
494.5
NK_3
482.4
NK_4
467.8
NK_5
464.6
NK_6
463.7
NK_7
462.9
NK_8
460.7
NK_9
454.5
NK_10
448.9
NK_11
443.9
NK_12
443.7
NK_13
437.1
NK_14
435.6
NK_15
433.9
NK_16
433.8
NK_17
429.8
NK_18
429.0
NK_19
420.1
NK_20
416.3
NK_21
414.5
NK_22
411.3
NK_23
408.6
NK_24
405.4
NK_25
403.2
NK_26
402.1
NK_27
399.9
NK_28
398.7
NK_29
397.7
NK_30
397.1
NK_31
396.9
NK_32
392.0
NK_33
386.3
NK_34
382.3
NK_35
378.3
NK_36
372.1
NK_37
370.3
NK_38
368.9
NK_39
367.9
NK_40
363.8
NK_41
363.4
NK_42
361.6
NK_43
361.4
NK_44
361.1
NK_45
359.9
NK_46
358.7
NK_47
356.8
NK_48
356.7
NK_49
356.2
NK_50
355.3
NK_51
352.6
NK_52
351.4
NK_53
346.3
NK_54
346.0
NK_55
345.4
NK_56
339.4
NK_57
336.8
NK_58
335.9
NK_59
335.7
NK_60
335.5
NK_61
333.8
NK_62
332.4
NK_63
331.2
NK_64
330.6
NK_65
330.6
NK_66
328.6
NK_67
328.0
NK_68
324.8
NK_69
322.7
NK_70
320.0
NK_71
319.8
NK_72
317.0
NK_73
315.2
NK_74
312.8
NK_75
312.1
NK_76
297.8
NK_77
297.1
NK_78
295.3
NK_79
294.3
NK_80
293.5
NK_81
292.8
NK_82
278.4
NK_83
275.7
NK_84
274.8
NK_85
271.3
NK_86
264.4
NK_87
257.9
NK_88
255.0
NK_89
245.3
NK_90
227.8
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