A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.7
nTPM
Monaco:
11.7
nTPM
Schmiedel:
81.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.7
HPA sample
nTPM
Memory B-cell nTPM: 0.7
Samples: 6
Max nTPM: 1.2
Min nTPM: 0.1
P10809_1017
1.0
P10809_1025
1.2
P10809_1044
0.5
P10809_1063
0.4
P10809_1092
0.1
P10809_1105
1.0
Naive B-cell nTPM: 0.7
Samples: 6
Max nTPM: 2.1
Min nTPM: 0.3
P10809_1011
0.8
P10809_1029
0.3
P10809_1048
2.1
P10809_1067
0.3
P10809_1091
0.4
P10809_1104
0.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 7.5
Samples: 4
Max nTPM: 8.0
Min nTPM: 7.1
RHH5310_R3677
7.4
RHH5218_R3590
7.6
RHH5247_R3619
7.1
RHH5276_R3648
8.0
Naive B-cell nTPM: 7.6
Samples: 4
Max nTPM: 10.4
Min nTPM: 3.6
RHH5308_R3675
7.6
RHH5216_R3588
3.6
RHH5245_R3617
10.4
RHH5274_R3646
8.9
Non-switched memory B-cell nTPM: 8.6
Samples: 4
Max nTPM: 12.0
Min nTPM: 4.7
RHH5309_R3676
8.2
RHH5217_R3589
9.4
RHH5246_R3618
4.7
RHH5275_R3647
12.0
Plasmablast nTPM: 11.4
Samples: 4
Max nTPM: 12.6
Min nTPM: 10.1
RHH5312_R3679
12.6
RHH5220_R3592
10.7
RHH5249_R3621
12.0
RHH5278_R3650
10.1
Switched memory B-cell nTPM: 11.7
Samples: 4
Max nTPM: 13.5
Min nTPM: 10.2
RHH5311_R3678
13.5
RHH5219_R3591
10.8
RHH5248_R3620
12.4
RHH5277_R3649
10.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.2
Schmiedel sample id
TPM
Naive B-cell TPM: 81.2
Samples: 91
Max TPM: 119.0
Min TPM: 57.2
B_CELL_NAIVE_1
119.0
B_CELL_NAIVE_2
117.7
B_CELL_NAIVE_3
114.9
B_CELL_NAIVE_4
106.5
B_CELL_NAIVE_5
104.0
B_CELL_NAIVE_6
103.5
B_CELL_NAIVE_7
101.5
B_CELL_NAIVE_8
100.3
B_CELL_NAIVE_9
100.2
B_CELL_NAIVE_10
98.6
B_CELL_NAIVE_11
95.8
B_CELL_NAIVE_12
94.8
B_CELL_NAIVE_13
92.4
B_CELL_NAIVE_14
92.1
B_CELL_NAIVE_15
91.9
B_CELL_NAIVE_16
90.9
B_CELL_NAIVE_17
90.0
B_CELL_NAIVE_18
89.2
B_CELL_NAIVE_19
89.0
B_CELL_NAIVE_20
88.8
B_CELL_NAIVE_21
88.6
B_CELL_NAIVE_22
87.7
B_CELL_NAIVE_23
87.7
B_CELL_NAIVE_24
86.4
B_CELL_NAIVE_25
86.2
B_CELL_NAIVE_26
86.1
B_CELL_NAIVE_27
86.0
B_CELL_NAIVE_28
85.3
B_CELL_NAIVE_29
85.0
B_CELL_NAIVE_30
84.9
B_CELL_NAIVE_31
84.2
B_CELL_NAIVE_32
83.8
B_CELL_NAIVE_33
83.7
B_CELL_NAIVE_34
83.6
B_CELL_NAIVE_35
83.1
B_CELL_NAIVE_36
82.2
B_CELL_NAIVE_37
81.9
B_CELL_NAIVE_38
81.6
B_CELL_NAIVE_39
81.5
B_CELL_NAIVE_40
81.0
B_CELL_NAIVE_41
81.0
B_CELL_NAIVE_42
80.8
B_CELL_NAIVE_43
80.8
B_CELL_NAIVE_44
80.7
B_CELL_NAIVE_45
80.6
B_CELL_NAIVE_46
78.6
B_CELL_NAIVE_47
78.3
B_CELL_NAIVE_48
78.1
B_CELL_NAIVE_49
77.8
B_CELL_NAIVE_50
77.8
B_CELL_NAIVE_51
77.8
B_CELL_NAIVE_52
77.2
B_CELL_NAIVE_53
77.0
B_CELL_NAIVE_54
76.9
B_CELL_NAIVE_55
76.9
B_CELL_NAIVE_56
76.7
B_CELL_NAIVE_57
76.4
B_CELL_NAIVE_58
76.4
B_CELL_NAIVE_59
76.4
B_CELL_NAIVE_60
76.1
B_CELL_NAIVE_61
76.1
B_CELL_NAIVE_62
75.2
B_CELL_NAIVE_63
75.2
B_CELL_NAIVE_64
74.8
B_CELL_NAIVE_65
74.3
B_CELL_NAIVE_66
73.9
B_CELL_NAIVE_67
73.0
B_CELL_NAIVE_68
72.9
B_CELL_NAIVE_69
72.8
B_CELL_NAIVE_70
72.0
B_CELL_NAIVE_71
71.8
B_CELL_NAIVE_72
71.8
B_CELL_NAIVE_73
71.0
B_CELL_NAIVE_74
70.5
B_CELL_NAIVE_75
69.2
B_CELL_NAIVE_76
69.2
B_CELL_NAIVE_77
68.8
B_CELL_NAIVE_78
68.8
B_CELL_NAIVE_79
68.6
B_CELL_NAIVE_80
68.5
B_CELL_NAIVE_81
68.2
B_CELL_NAIVE_82
68.2
B_CELL_NAIVE_83
68.1
B_CELL_NAIVE_84
66.9
B_CELL_NAIVE_85
66.3
B_CELL_NAIVE_86
66.1
B_CELL_NAIVE_87
65.8
B_CELL_NAIVE_88
65.3
B_CELL_NAIVE_89
64.4
B_CELL_NAIVE_90
58.9
B_CELL_NAIVE_91
57.2
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