A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
12.3
nTPM
Schmiedel:
99.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
Classical monocyte nTPM: 0.4
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.2
P10809_1003
0.2
P10809_1020
0.5
P10809_1039
0.6
P10809_1058
0.6
P10809_1080
0.3
P10809_1107
0.5
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 1.2
Min nTPM: 0.2
P10809_1004
0.2
P10809_1023
0.8
P10809_1042
0.3
P10809_1061
1.2
P10809_1081
0.6
P10809_1108
0.8
Non-classical monocyte nTPM: 0.8
Samples: 5
Max nTPM: 1.2
Min nTPM: 0.0
P10809_1005
0.7
P10809_1053
1.1
P10809_1072
0.0
P10809_1082
1.2
P10809_1109
1.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.3
Monaco sample
nTPM
Classical monocyte nTPM: 9.3
Samples: 4
Max nTPM: 11.4
Min nTPM: 8.2
RHH5313_R3680
8.5
RHH5221_R3593
11.4
RHH5250_R3622
9.0
RHH5279_R3651
8.2
Intermediate monocyte nTPM: 12.3
Samples: 4
Max nTPM: 20.5
Min nTPM: 7.0
RHH5314_R3681
7.0
RHH5222_R3594
8.7
RHH5251_R3623
20.5
RHH5280_R3652
13.0
Non-classical monocyte nTPM: 9.8
Samples: 4
Max nTPM: 13.8
Min nTPM: 5.8
RHH5315_R3682
13.8
RHH5223_R3595
11.6
RHH5252_R3624
8.0
RHH5281_R3653
5.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
99.3
Schmiedel sample id
TPM
Classical monocyte TPM: 64.2
Samples: 91
Max TPM: 84.7
Min TPM: 44.0
MONOCYTES_1
84.7
MONOCYTES_2
83.7
MONOCYTES_3
81.4
MONOCYTES_4
80.1
MONOCYTES_5
79.9
MONOCYTES_6
79.0
MONOCYTES_7
78.8
MONOCYTES_8
78.7
MONOCYTES_9
78.3
MONOCYTES_10
77.3
MONOCYTES_11
77.1
MONOCYTES_12
75.6
MONOCYTES_13
75.1
MONOCYTES_14
74.6
MONOCYTES_15
73.7
MONOCYTES_16
73.6
MONOCYTES_17
73.1
MONOCYTES_18
72.6
MONOCYTES_19
71.2
MONOCYTES_20
71.2
MONOCYTES_21
70.6
MONOCYTES_22
69.7
MONOCYTES_23
69.5
MONOCYTES_24
69.2
MONOCYTES_25
69.1
MONOCYTES_26
68.8
MONOCYTES_27
68.7
MONOCYTES_28
68.5
MONOCYTES_29
68.3
MONOCYTES_30
67.4
MONOCYTES_31
67.3
MONOCYTES_32
67.0
MONOCYTES_33
66.9
MONOCYTES_34
66.2
MONOCYTES_35
66.1
MONOCYTES_36
66.0
MONOCYTES_37
65.8
MONOCYTES_38
65.6
MONOCYTES_39
65.1
MONOCYTES_40
64.9
MONOCYTES_41
63.8
MONOCYTES_42
63.8
MONOCYTES_43
63.4
MONOCYTES_44
63.4
MONOCYTES_45
63.3
MONOCYTES_46
63.1
MONOCYTES_47
62.8
MONOCYTES_48
62.4
MONOCYTES_49
61.9
MONOCYTES_50
61.6
MONOCYTES_51
61.5
MONOCYTES_52
61.1
MONOCYTES_53
61.0
MONOCYTES_54
60.9
MONOCYTES_55
60.8
MONOCYTES_56
60.6
MONOCYTES_57
60.4
MONOCYTES_58
60.1
MONOCYTES_59
59.9
MONOCYTES_60
59.8
MONOCYTES_61
59.7
MONOCYTES_62
59.7
MONOCYTES_63
59.7
MONOCYTES_64
59.6
MONOCYTES_65
59.3
MONOCYTES_66
59.1
MONOCYTES_67
59.1
MONOCYTES_68
59.0
MONOCYTES_69
58.9
MONOCYTES_70
58.8
MONOCYTES_71
58.2
MONOCYTES_72
58.2
MONOCYTES_73
58.1
MONOCYTES_74
58.0
MONOCYTES_75
57.2
MONOCYTES_76
56.7
MONOCYTES_77
56.7
MONOCYTES_78
56.4
MONOCYTES_79
54.5
MONOCYTES_80
54.5
MONOCYTES_81
53.1
MONOCYTES_82
52.9
MONOCYTES_83
52.7
MONOCYTES_84
52.4
MONOCYTES_85
51.9
MONOCYTES_86
51.9
MONOCYTES_87
51.3
MONOCYTES_88
50.2
MONOCYTES_89
48.9
MONOCYTES_90
47.5
MONOCYTES_91
44.0
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Non-classical monocyte TPM: 99.3
Samples: 90
Max TPM: 145.1
Min TPM: 65.4
M2_1
145.1
M2_2
143.1
M2_3
137.6
M2_4
131.2
M2_5
128.1
M2_6
124.1
M2_7
124.0
M2_8
123.6
M2_9
120.3
M2_10
119.4
M2_11
119.2
M2_12
119.0
M2_13
118.9
M2_14
118.1
M2_15
117.2
M2_16
116.8
M2_17
116.5
M2_18
115.4
M2_19
111.1
M2_20
110.3
M2_21
110.2
M2_22
110.1
M2_23
109.8
M2_24
109.6
M2_25
108.7
M2_26
107.7
M2_27
107.4
M2_28
106.2
M2_29
105.4
M2_30
104.7
M2_31
104.4
M2_32
103.9
M2_33
103.2
M2_34
102.8
M2_35
101.2
M2_36
101.0
M2_37
99.6
M2_38
99.2
M2_39
98.6
M2_40
98.4
M2_41
98.3
M2_42
97.5
M2_43
97.5
M2_44
97.3
M2_45
97.1
M2_46
96.6
M2_47
96.4
M2_48
96.3
M2_49
96.2
M2_50
95.4
M2_51
94.8
M2_52
94.1
M2_53
93.6
M2_54
93.3
M2_55
93.3
M2_56
92.3
M2_57
91.6
M2_58
91.5
M2_59
91.2
M2_60
90.9
M2_61
90.5
M2_62
90.4
M2_63
90.3
M2_64
90.2
M2_65
90.1
M2_66
89.2
M2_67
89.2
M2_68
88.9
M2_69
88.6
M2_70
88.5
M2_71
88.5
M2_72
87.9
M2_73
87.1
M2_74
86.6
M2_75
86.4
M2_76
86.4
M2_77
85.1
M2_78
84.2
M2_79
83.9
M2_80
80.1
M2_81
80.0
M2_82
78.1
M2_83
76.8
M2_84
76.1
M2_85
75.6
M2_86
74.8
M2_87
73.1
M2_88
70.3
M2_89
66.5
M2_90
65.4
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