A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.2
nTPM
Monaco:
11.1
nTPM
Schmiedel:
98.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.2
HPA sample
nTPM
NK-cell nTPM: 1.2
Samples: 6
Max nTPM: 2.7
Min nTPM: 0.0
P10809_1013
1.0
P10809_1033
1.9
P10809_1052
0.0
P10809_1071
2.7
P10809_1093
0.0
P10809_1103
1.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.1
Monaco sample
nTPM
NK-cell nTPM: 11.2
Samples: 4
Max nTPM: 13.4
Min nTPM: 9.0
RHH5316_R3683
9.4
RHH5224_R3596
12.9
RHH5253_R3625
13.4
RHH5282_R3654
9.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.7
Schmiedel sample id
TPM
NK-cell TPM: 98.7
Samples: 90
Max TPM: 153.0
Min TPM: 73.8
NK_1
153.0
NK_2
140.1
NK_3
138.6
NK_4
137.1
NK_5
136.4
NK_6
136.1
NK_7
128.5
NK_8
124.0
NK_9
122.0
NK_10
120.8
NK_11
117.3
NK_12
116.7
NK_13
115.7
NK_14
113.4
NK_15
112.8
NK_16
112.0
NK_17
111.6
NK_18
110.8
NK_19
110.0
NK_20
109.8
NK_21
108.6
NK_22
108.5
NK_23
107.5
NK_24
106.6
NK_25
105.5
NK_26
105.2
NK_27
105.1
NK_28
104.6
NK_29
103.1
NK_30
103.0
NK_31
101.7
NK_32
101.3
NK_33
100.7
NK_34
99.7
NK_35
99.1
NK_36
98.5
NK_37
98.0
NK_38
97.9
NK_39
97.8
NK_40
97.4
NK_41
97.0
NK_42
96.9
NK_43
96.7
NK_44
96.1
NK_45
96.1
NK_46
95.6
NK_47
95.5
NK_48
95.3
NK_49
95.3
NK_50
95.0
NK_51
94.7
NK_52
94.1
NK_53
93.6
NK_54
93.2
NK_55
92.7
NK_56
92.3
NK_57
90.4
NK_58
90.3
NK_59
89.8
NK_60
89.6
NK_61
89.4
NK_62
88.2
NK_63
87.9
NK_64
87.8
NK_65
87.6
NK_66
87.3
NK_67
86.6
NK_68
86.4
NK_69
86.4
NK_70
85.4
NK_71
85.3
NK_72
84.9
NK_73
84.5
NK_74
84.5
NK_75
82.5
NK_76
81.8
NK_77
81.4
NK_78
81.3
NK_79
80.9
NK_80
80.7
NK_81
80.7
NK_82
80.6
NK_83
80.6
NK_84
79.9
NK_85
79.3
NK_86
77.7
NK_87
77.6
NK_88
76.0
NK_89
75.6
NK_90
73.8
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