MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.2 nTPM
HPA Brain:264.4 nTPM
GTEx:97.2 nTPM
FANTOM5:519.1 Scaled Tags Per Million
Pig:4.8 nTPM
Mouse:10.5 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 264.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 179.8
2019 Male, age 18, unknown 253.1
1870 Female, age 42, unknown 227.5
1830 Male, age 51, unknown 227.2
1833 Male, age 53, unknown 205.7
2411 Female, age 72, unknown 198.5
2828 Female, age 72, unknown 160.0
2586 Male, age 75, left hemisphere 136.4
2666 Male, age 74, left hemisphere 134.7
1827 Male, age 72, unknown 128.7
2219 Male, age 76, both hemispheres 125.9
Dorsal raphe nucleus
nTPM: 151.5
2750 Male, age 76, both hemispheres 252.6
2016 Female, age 72, unknown 142.9
1828 Male, age 53, unknown 136.5
2298 Female, age 72, unknown 118.2
2047 Male, age 72, unknown 107.1
Inferior colliculus
nTPM: 114.3
1848 Female, age 42, unknown 118.8
2849 Male, age 72, unknown 117.8
1890 Male, age 53, unknown 115.2
2097 Female, age 72, unknown 105.4
Median raphe nucleus
nTPM: 128.3
2220 Male, age 76, midline 128.3
Periaquaductal grey, anterior
nTPM: 104.3
2502 Female, age 75, unknown 110.7
1947 Male, age 18, unknown 104.6
1795 Male, age 51, unknown 97.7
Periaquaductal grey, dorsal
nTPM: 99.8
2464 Female, age 72, unknown 139.5
1831 Male, age 72, unknown 100.9
2850 Male, age 76, both hemispheres 90.9
1840 Male, age 53, unknown 68.0
Periaquaductal grey, lateral
nTPM: 118.3
2272 Male, age 74, both hemispheres 134.5
2053 Male, age 18, unknown 123.9
2140 Male, age 76, both hemispheres 96.7
Pretectal area
nTPM: 127.3
1815 Male, age 53, unknown 174.4
2667 Female, age 75, unknown 171.9
2316 Male, age 76, right hemisphere 140.1
2273 Male, age 74, both hemispheres 138.8
2407 Male, age 75, both hemispheres 134.9
2007 Male, age 72, unknown 123.2
1817 Female, age 42, unknown 122.3
2825 Male, age 18, unknown 115.2
1944 Female, age 72, unknown 105.4
2224 Female, age 72, unknown 103.2
1816 Male, age 51, unknown 70.5
Red nucleus
nTPM: 264.4
2823 Male, age 76, right hemisphere 362.7
1904 Male, age 53, unknown 322.8
1865 Male, age 51, unknown 308.8
2227 Male, age 72, unknown 293.3
2769 Male, age 72, unknown 287.4
2785 Male, age 18, unknown 271.2
1821 Female, age 72, unknown 270.8
1954 Female, age 42, unknown 251.7
2588 Male, age 74, left hemisphere 241.2
2503 Female, age 72, unknown 221.1
2584 Male, age 75, left hemisphere 186.1
2725 Female, age 75, unknown 155.5
Substantia nigra
nTPM: 146.3
2583 Male, age 75, right hemisphere 209.2
2409 Female, age 72, unknown 181.1
1851 Male, age 51, unknown 174.3
2699 Male, age 18, unknown 162.9
2590 Female, age 75, unknown 159.9
1889 Female, age 72, unknown 138.6
2241 Male, age 72, unknown 120.0
1941 Male, age 53, unknown 119.7
1916 Female, age 42, unknown 107.7
2665 Male, age 74, both hemispheres 89.7
Superior colliculus
nTPM: 137.8
1913 Female, age 42, unknown 226.1
1995 Male, age 72, unknown 207.3
2587 Male, age 74, left hemisphere 150.1
1839 Male, age 51, unknown 139.7
1895 Male, age 76, right hemisphere 134.5
2668 Female, age 75, unknown 130.7
1796 Male, age 53, unknown 120.5
2087 Female, age 72, unknown 108.0
2664 Male, age 75, both hemispheres 86.1
2261 Male, age 18, unknown 75.4
Ventral tegmental area
nTPM: 165.8
2223 Female, age 72, unknown 262.7
2410 Female, age 72, unknown 181.1
2021 Male, age 53, unknown 147.0
1942 Male, age 51, unknown 145.9
2218 Male, age 76, both hemispheres 133.2
1915 Female, age 42, unknown 125.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 97.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.2
Samples: 183

Max nTPM: 324.9
Min nTPM: 20.8
Std nTPM: 51.2
Median nTPM: 89.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 324.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 314.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 290.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 266.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 230.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 216.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 204.8
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 196.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 194.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 187.5
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 180.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 519.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 519.1
FF:10158-103A5 76 years, female 519.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 4.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.5
Samples: 4

Max nTPM: 3.7
Min nTPM: 1.2
Sample A Female 1.2
Sample B Female 3.0
Sample C Male 2.1
Sample D Male 3.7
Midbrain
nTPM: 2.9
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.3
Sample A Female 2.5
Sample B Female 2.3
Sample C Male 4.2
Sample D Male 2.5
Periaqueductal gray
nTPM: 3.6
Samples: 3

Max nTPM: 4.1
Min nTPM: 2.9
Sample B Female 2.9
Sample C Male 3.8
Sample D Male 4.1
Superior colliculi
nTPM: 4.8
Samples: 4

Max nTPM: 7.2
Min nTPM: 3.5
Sample A Female 4.2
Sample B Female 4.4
Sample C Male 7.2
Sample D Male 3.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 12.2
Min nTPM: 9.8
Sample A Male 12.2
Sample B Male 9.8
Sample C Female 10.3
Sample D Female 9.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
80514103 Antisense, RP_080505_03_H04, Mouse strain C57BL/6J (56 days, male) 0.1

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