A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
35.3
nTPM
Monaco:
149.2
nTPM
Schmiedel:
76.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.3
HPA sample
nTPM
Memory B-cell nTPM: 35.3
Samples: 6
Max nTPM: 44.4
Min nTPM: 30.7
P10809_1017
31.6
P10809_1025
44.4
P10809_1044
31.2
P10809_1063
33.6
P10809_1092
40.5
P10809_1105
30.7
Naive B-cell nTPM: 27.1
Samples: 6
Max nTPM: 34.5
Min nTPM: 19.5
P10809_1011
20.6
P10809_1029
31.6
P10809_1048
34.5
P10809_1067
19.5
P10809_1091
30.8
P10809_1104
25.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
149.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 126.9
Samples: 4
Max nTPM: 158.1
Min nTPM: 101.2
RHH5310_R3677
123.2
RHH5218_R3590
124.9
RHH5247_R3619
158.1
RHH5276_R3648
101.2
Naive B-cell nTPM: 111.6
Samples: 4
Max nTPM: 138.2
Min nTPM: 80.8
RHH5308_R3675
80.8
RHH5216_R3588
129.5
RHH5245_R3617
138.2
RHH5274_R3646
97.8
Non-switched memory B-cell nTPM: 140.3
Samples: 4
Max nTPM: 174.5
Min nTPM: 117.2
RHH5309_R3676
117.2
RHH5217_R3589
174.5
RHH5246_R3618
134.1
RHH5275_R3647
135.3
Plasmablast nTPM: 92.0
Samples: 4
Max nTPM: 105.4
Min nTPM: 73.1
RHH5312_R3679
91.7
RHH5220_R3592
73.1
RHH5249_R3621
105.4
RHH5278_R3650
97.8
Switched memory B-cell nTPM: 149.3
Samples: 4
Max nTPM: 221.9
Min nTPM: 109.0
RHH5311_R3678
124.4
RHH5219_R3591
141.7
RHH5248_R3620
221.9
RHH5277_R3649
109.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.2
Schmiedel sample id
TPM
Naive B-cell TPM: 76.2
Samples: 91
Max TPM: 107.7
Min TPM: 52.3
B_CELL_NAIVE_1
107.7
B_CELL_NAIVE_2
102.3
B_CELL_NAIVE_3
101.1
B_CELL_NAIVE_4
101.0
B_CELL_NAIVE_5
100.2
B_CELL_NAIVE_6
99.1
B_CELL_NAIVE_7
98.2
B_CELL_NAIVE_8
94.9
B_CELL_NAIVE_9
93.0
B_CELL_NAIVE_10
92.1
B_CELL_NAIVE_11
90.1
B_CELL_NAIVE_12
89.0
B_CELL_NAIVE_13
88.1
B_CELL_NAIVE_14
87.8
B_CELL_NAIVE_15
87.7
B_CELL_NAIVE_16
86.3
B_CELL_NAIVE_17
84.9
B_CELL_NAIVE_18
82.7
B_CELL_NAIVE_19
82.5
B_CELL_NAIVE_20
81.9
B_CELL_NAIVE_21
81.9
B_CELL_NAIVE_22
80.6
B_CELL_NAIVE_23
79.5
B_CELL_NAIVE_24
79.3
B_CELL_NAIVE_25
79.0
B_CELL_NAIVE_26
79.0
B_CELL_NAIVE_27
78.8
B_CELL_NAIVE_28
78.6
B_CELL_NAIVE_29
78.5
B_CELL_NAIVE_30
78.4
B_CELL_NAIVE_31
78.2
B_CELL_NAIVE_32
77.8
B_CELL_NAIVE_33
77.7
B_CELL_NAIVE_34
77.4
B_CELL_NAIVE_35
77.1
B_CELL_NAIVE_36
76.9
B_CELL_NAIVE_37
76.5
B_CELL_NAIVE_38
76.3
B_CELL_NAIVE_39
75.7
B_CELL_NAIVE_40
75.5
B_CELL_NAIVE_41
75.4
B_CELL_NAIVE_42
75.4
B_CELL_NAIVE_43
75.3
B_CELL_NAIVE_44
75.2
B_CELL_NAIVE_45
75.0
B_CELL_NAIVE_46
74.8
B_CELL_NAIVE_47
74.7
B_CELL_NAIVE_48
74.6
B_CELL_NAIVE_49
74.2
B_CELL_NAIVE_50
74.2
B_CELL_NAIVE_51
74.0
B_CELL_NAIVE_52
73.6
B_CELL_NAIVE_53
73.4
B_CELL_NAIVE_54
72.5
B_CELL_NAIVE_55
72.4
B_CELL_NAIVE_56
71.8
B_CELL_NAIVE_57
71.6
B_CELL_NAIVE_58
71.5
B_CELL_NAIVE_59
71.5
B_CELL_NAIVE_60
71.4
B_CELL_NAIVE_61
71.2
B_CELL_NAIVE_62
70.7
B_CELL_NAIVE_63
70.6
B_CELL_NAIVE_64
70.3
B_CELL_NAIVE_65
70.2
B_CELL_NAIVE_66
69.9
B_CELL_NAIVE_67
69.6
B_CELL_NAIVE_68
69.5
B_CELL_NAIVE_69
69.4
B_CELL_NAIVE_70
69.2
B_CELL_NAIVE_71
68.6
B_CELL_NAIVE_72
68.5
B_CELL_NAIVE_73
68.3
B_CELL_NAIVE_74
68.2
B_CELL_NAIVE_75
67.6
B_CELL_NAIVE_76
67.2
B_CELL_NAIVE_77
66.4
B_CELL_NAIVE_78
65.5
B_CELL_NAIVE_79
64.7
B_CELL_NAIVE_80
64.5
B_CELL_NAIVE_81
64.1
B_CELL_NAIVE_82
63.9
B_CELL_NAIVE_83
63.8
B_CELL_NAIVE_84
63.8
B_CELL_NAIVE_85
63.3
B_CELL_NAIVE_86
63.2
B_CELL_NAIVE_87
62.9
B_CELL_NAIVE_88
61.9
B_CELL_NAIVE_89
61.7
B_CELL_NAIVE_90
60.3
B_CELL_NAIVE_91
52.3
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