A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
74.1
nTPM
Monaco:
157.2
nTPM
Schmiedel:
94.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.1
HPA sample
nTPM
Classical monocyte nTPM: 56.9
Samples: 6
Max nTPM: 67.9
Min nTPM: 47.7
P10809_1003
57.3
P10809_1020
55.5
P10809_1039
67.9
P10809_1058
47.7
P10809_1080
57.1
P10809_1107
56.1
Intermediate monocyte nTPM: 63.0
Samples: 6
Max nTPM: 74.5
Min nTPM: 49.9
P10809_1004
60.3
P10809_1023
71.5
P10809_1042
74.5
P10809_1061
67.4
P10809_1081
49.9
P10809_1108
54.4
Non-classical monocyte nTPM: 74.1
Samples: 5
Max nTPM: 85.1
Min nTPM: 58.5
P10809_1005
81.4
P10809_1053
85.1
P10809_1072
68.9
P10809_1082
58.5
P10809_1109
76.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
157.2
Monaco sample
nTPM
Classical monocyte nTPM: 157.2
Samples: 4
Max nTPM: 180.6
Min nTPM: 132.6
RHH5313_R3680
132.6
RHH5221_R3593
139.5
RHH5250_R3622
176.0
RHH5279_R3651
180.6
Intermediate monocyte nTPM: 108.8
Samples: 4
Max nTPM: 131.9
Min nTPM: 90.7
RHH5314_R3681
131.9
RHH5222_R3594
92.8
RHH5251_R3623
90.7
RHH5280_R3652
119.7
Non-classical monocyte nTPM: 157.0
Samples: 4
Max nTPM: 177.8
Min nTPM: 132.7
RHH5315_R3682
132.7
RHH5223_R3595
164.1
RHH5252_R3624
153.3
RHH5281_R3653
177.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.8
Schmiedel sample id
TPM
Classical monocyte TPM: 57.5
Samples: 91
Max TPM: 91.2
Min TPM: 40.6
MONOCYTES_1
91.2
MONOCYTES_2
86.9
MONOCYTES_3
82.1
MONOCYTES_4
78.7
MONOCYTES_5
74.3
MONOCYTES_6
72.7
MONOCYTES_7
72.3
MONOCYTES_8
71.2
MONOCYTES_9
69.8
MONOCYTES_10
69.0
MONOCYTES_11
66.3
MONOCYTES_12
66.2
MONOCYTES_13
65.8
MONOCYTES_14
64.3
MONOCYTES_15
64.3
MONOCYTES_16
64.1
MONOCYTES_17
63.4
MONOCYTES_18
62.9
MONOCYTES_19
62.7
MONOCYTES_20
62.6
MONOCYTES_21
62.3
MONOCYTES_22
61.9
MONOCYTES_23
61.9
MONOCYTES_24
61.8
MONOCYTES_25
61.6
MONOCYTES_26
61.3
MONOCYTES_27
60.8
MONOCYTES_28
60.8
MONOCYTES_29
60.8
MONOCYTES_30
60.8
MONOCYTES_31
60.2
MONOCYTES_32
60.1
MONOCYTES_33
59.4
MONOCYTES_34
59.3
MONOCYTES_35
59.2
MONOCYTES_36
59.2
MONOCYTES_37
59.1
MONOCYTES_38
59.0
MONOCYTES_39
58.8
MONOCYTES_40
58.5
MONOCYTES_41
57.6
MONOCYTES_42
57.3
MONOCYTES_43
57.2
MONOCYTES_44
57.1
MONOCYTES_45
56.7
MONOCYTES_46
56.6
MONOCYTES_47
56.5
MONOCYTES_48
56.5
MONOCYTES_49
56.4
MONOCYTES_50
56.1
MONOCYTES_51
55.8
MONOCYTES_52
55.6
MONOCYTES_53
55.5
MONOCYTES_54
55.3
MONOCYTES_55
55.2
MONOCYTES_56
55.2
MONOCYTES_57
55.1
MONOCYTES_58
55.1
MONOCYTES_59
54.8
MONOCYTES_60
54.3
MONOCYTES_61
54.2
MONOCYTES_62
54.1
MONOCYTES_63
53.8
MONOCYTES_64
53.3
MONOCYTES_65
52.0
MONOCYTES_66
51.3
MONOCYTES_67
51.3
MONOCYTES_68
51.2
MONOCYTES_69
51.0
MONOCYTES_70
50.5
MONOCYTES_71
50.3
MONOCYTES_72
49.5
MONOCYTES_73
49.1
MONOCYTES_74
49.0
MONOCYTES_75
48.9
MONOCYTES_76
48.7
MONOCYTES_77
48.5
MONOCYTES_78
47.8
MONOCYTES_79
47.4
MONOCYTES_80
46.7
MONOCYTES_81
46.5
MONOCYTES_82
46.1
MONOCYTES_83
46.1
MONOCYTES_84
45.7
MONOCYTES_85
45.6
MONOCYTES_86
45.4
MONOCYTES_87
45.4
MONOCYTES_88
43.0
MONOCYTES_89
42.9
MONOCYTES_90
41.7
MONOCYTES_91
40.6
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Non-classical monocyte TPM: 94.8
Samples: 90
Max TPM: 134.5
Min TPM: 57.3
M2_1
134.5
M2_2
130.0
M2_3
122.1
M2_4
121.4
M2_5
118.9
M2_6
117.6
M2_7
116.8
M2_8
114.9
M2_9
113.9
M2_10
110.7
M2_11
109.9
M2_12
106.4
M2_13
106.1
M2_14
105.7
M2_15
104.8
M2_16
104.6
M2_17
104.1
M2_18
103.7
M2_19
103.6
M2_20
103.1
M2_21
102.4
M2_22
101.7
M2_23
101.4
M2_24
101.3
M2_25
100.9
M2_26
100.9
M2_27
100.7
M2_28
100.3
M2_29
100.1
M2_30
99.6
M2_31
99.5
M2_32
99.3
M2_33
98.9
M2_34
98.4
M2_35
98.2
M2_36
98.1
M2_37
97.9
M2_38
97.3
M2_39
97.1
M2_40
97.0
M2_41
96.8
M2_42
96.4
M2_43
96.4
M2_44
95.8
M2_45
95.2
M2_46
95.2
M2_47
95.1
M2_48
94.6
M2_49
94.2
M2_50
93.5
M2_51
92.0
M2_52
90.8
M2_53
90.5
M2_54
90.4
M2_55
90.2
M2_56
90.1
M2_57
89.9
M2_58
89.4
M2_59
89.2
M2_60
89.2
M2_61
87.4
M2_62
85.9
M2_63
84.8
M2_64
84.8
M2_65
84.7
M2_66
84.6
M2_67
84.4
M2_68
84.2
M2_69
84.1
M2_70
83.8
M2_71
83.6
M2_72
83.5
M2_73
83.2
M2_74
83.0
M2_75
82.7
M2_76
82.5
M2_77
82.2
M2_78
82.2
M2_79
81.5
M2_80
81.1
M2_81
81.1
M2_82
80.6
M2_83
80.2
M2_84
79.8
M2_85
79.4
M2_86
77.4
M2_87
77.1
M2_88
75.6
M2_89
71.1
M2_90
57.3
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