A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
37.3
nTPM
Monaco:
242.2
nTPM
Schmiedel:
155.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.3
HPA sample
nTPM
NK-cell nTPM: 37.4
Samples: 6
Max nTPM: 56.1
Min nTPM: 25.8
P10809_1013
26.8
P10809_1033
51.6
P10809_1052
34.6
P10809_1071
29.2
P10809_1093
56.1
P10809_1103
25.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
242.2
Monaco sample
nTPM
NK-cell nTPM: 242.2
Samples: 4
Max nTPM: 306.9
Min nTPM: 187.3
RHH5316_R3683
187.3
RHH5224_R3596
306.9
RHH5253_R3625
248.0
RHH5282_R3654
226.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
155.9
Schmiedel sample id
TPM
NK-cell TPM: 156.0
Samples: 90
Max TPM: 254.3
Min TPM: 107.1
NK_1
254.3
NK_2
251.9
NK_3
246.1
NK_4
225.9
NK_5
219.8
NK_6
219.3
NK_7
200.7
NK_8
200.6
NK_9
197.1
NK_10
189.5
NK_11
189.3
NK_12
186.5
NK_13
183.6
NK_14
181.5
NK_15
179.1
NK_16
178.2
NK_17
176.1
NK_18
174.5
NK_19
174.3
NK_20
173.6
NK_21
170.3
NK_22
170.0
NK_23
169.6
NK_24
167.6
NK_25
167.3
NK_26
166.4
NK_27
166.2
NK_28
166.0
NK_29
164.4
NK_30
163.7
NK_31
163.2
NK_32
161.6
NK_33
160.9
NK_34
159.3
NK_35
159.1
NK_36
158.6
NK_37
157.5
NK_38
157.4
NK_39
157.3
NK_40
156.9
NK_41
156.6
NK_42
155.5
NK_43
155.3
NK_44
155.2
NK_45
153.2
NK_46
151.6
NK_47
150.3
NK_48
149.8
NK_49
148.4
NK_50
146.5
NK_51
146.1
NK_52
145.0
NK_53
144.8
NK_54
144.6
NK_55
144.4
NK_56
142.2
NK_57
141.9
NK_58
141.7
NK_59
141.6
NK_60
141.4
NK_61
141.3
NK_62
140.8
NK_63
139.0
NK_64
138.7
NK_65
136.6
NK_66
135.7
NK_67
135.2
NK_68
134.8
NK_69
134.2
NK_70
133.7
NK_71
130.5
NK_72
130.0
NK_73
129.1
NK_74
128.6
NK_75
128.5
NK_76
127.6
NK_77
127.6
NK_78
126.5
NK_79
126.4
NK_80
125.8
NK_81
121.1
NK_82
120.9
NK_83
119.7
NK_84
117.1
NK_85
116.8
NK_86
116.8
NK_87
116.0
NK_88
114.5
NK_89
113.7
NK_90
107.1
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