A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1668.1
nTPM
Monaco:
357.2
nTPM
Schmiedel:
840.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1668.1
HPA sample
nTPM
NK-cell nTPM: 1668.1
Samples: 6
Max nTPM: 2224.5
Min nTPM: 904.6
P10809_1013
1198.5
P10809_1033
2224.5
P10809_1052
1763.2
P10809_1071
1893.4
P10809_1093
904.6
P10809_1103
2024.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
357.2
Monaco sample
nTPM
NK-cell nTPM: 357.2
Samples: 4
Max nTPM: 518.1
Min nTPM: 231.2
RHH5316_R3683
518.1
RHH5224_R3596
231.2
RHH5253_R3625
293.5
RHH5282_R3654
386.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
840.5
Schmiedel sample id
TPM
NK-cell TPM: 840.5
Samples: 90
Max TPM: 1283.1
Min TPM: 328.5
NK_1
1283.1
NK_2
1243.7
NK_3
1204.4
NK_4
1198.4
NK_5
1174.0
NK_6
1126.6
NK_7
1121.5
NK_8
1120.7
NK_9
1111.3
NK_10
1097.3
NK_11
1087.1
NK_12
1070.1
NK_13
1059.5
NK_14
1038.7
NK_15
1027.6
NK_16
1027.4
NK_17
1022.2
NK_18
1021.6
NK_19
1019.6
NK_20
1014.0
NK_21
1009.1
NK_22
1006.6
NK_23
994.0
NK_24
989.7
NK_25
980.7
NK_26
979.0
NK_27
976.2
NK_28
970.6
NK_29
969.9
NK_30
964.0
NK_31
937.5
NK_32
935.4
NK_33
929.6
NK_34
929.6
NK_35
922.2
NK_36
918.1
NK_37
896.8
NK_38
874.5
NK_39
870.4
NK_40
867.7
NK_41
864.6
NK_42
860.3
NK_43
857.5
NK_44
856.2
NK_45
844.0
NK_46
837.4
NK_47
836.7
NK_48
828.8
NK_49
823.8
NK_50
818.3
NK_51
802.6
NK_52
802.3
NK_53
798.5
NK_54
796.8
NK_55
791.2
NK_56
791.1
NK_57
779.3
NK_58
769.0
NK_59
767.9
NK_60
754.1
NK_61
743.9
NK_62
741.3
NK_63
739.6
NK_64
739.3
NK_65
732.5
NK_66
729.2
NK_67
716.0
NK_68
711.9
NK_69
700.8
NK_70
698.3
NK_71
698.0
NK_72
688.6
NK_73
678.9
NK_74
675.2
NK_75
669.1
NK_76
624.9
NK_77
616.3
NK_78
597.9
NK_79
597.2
NK_80
592.7
NK_81
588.6
NK_82
554.6
NK_83
540.7
NK_84
540.3
NK_85
511.1
NK_86
460.7
NK_87
415.4
NK_88
404.2
NK_89
335.2
NK_90
328.5
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