A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5271.4
nTPM
Monaco:
506.0
nTPM
TOTAL PBMC - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5271.4
HPA sample
nTPM
Total PBMC nTPM: 5271.4
Samples: 6
Max nTPM: 10076.4
Min nTPM: 1330.5
P10809_1008
10076.4
P10809_1036
4875.4
P10809_1055
4657.8
P10809_1074
3605.9
P10809_1076
7082.3
P10809_1095
1330.5
TOTAL PBMC - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
506.0
Monaco sample
nTPM
Total PBMC nTPM: 506.1
Samples: 13
Max nTPM: 767.7
Min nTPM: 290.6
RHH5321_R3688
572.3
RHH5322_R3689
528.6
RHH5323_R3690
573.2
RHH5324_R3691
767.7
RHH5325_R3692
513.6
RHH5326_R3693
760.9
RHH5328_R3702
309.6
RHH5290_R3694
423.6
RHH5291_R3695
527.7
RHH5292_R3696
629.3
RHH5293_R3697
320.6
RHH5294_R3698
290.6
RHH5295_R3699
361.1
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The Human Protein Atlas project is funded
