On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
159.5
nTPM
HPA Brain:
179.5
nTPM
GTEx:
159.5
nTPM
FANTOM5:
84.6
Scaled Tags Per Million
Macaque:
21.0
nTPM
Mouse:
14.5
nTPM
Rat:
23.1
nTPM
Pig:
37.0
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
1630
Sample
Intensity
Spinal cord_01
6636
Spinal cord_02
2608
Spinal cord_03
1423
Spinal cord_04
ND
Spinal cord_05
1076
Spinal cord_06
ND
Spinal cord_07
ND
Spinal cord_08
1630
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
179.5
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 172.0
2734
Male, age 80, both hemispheres
265.3
2818
Female, age 79, both hemispheres
169.8
2819
Male, age 47, both hemispheres
136.9
2193
Male, age 75, both hemispheres
116.2
Cervical spinal cord, central gray nTPM: 133.6
1981
Female, age 72, midline
157.7
2194
Female, age 79, both hemispheres
146.5
2816
Male, age 47, midline
139.1
2048
Male, age 55, midline
127.8
2565
Male, age 75, midline
96.7
Cervical spinal cord, dorsal horn nTPM: 123.3
2296
Male, age 66, both hemispheres
200.4
2173
Female, age 72, unknown
195.2
2069
Male, age 47, both hemispheres
119.3
1877
Male, age 55, unknown
105.4
2721
Male, age 90, both hemispheres
61.3
2297
Male, age 75, both hemispheres
58.2
Cervical spinal cord, ventral horn nTPM: 151.3
2068
Male, age 55, unknown
180.6
2098
Female, age 72, unknown
173.4
2809
Male, age 90, both hemispheres
162.8
2820
Female, age 79, both hemispheres
141.5
2480
Male, age 75, both hemispheres
130.4
2295
Male, age 66, both hemispheres
118.9
Dorsal funiculus (white matter) nTPM: 179.5
2064
Female, age 79, both hemispheres
220.2
2810
Male, age 90, both hemispheres
192.6
2817
Male, age 47, both hemispheres
185.1
2812
Male, age 66, both hemispheres
159.0
2128
Male, age 75, both hemispheres
140.5
Lateral funiculus (white matter) nTPM: 164.4
2099
Male, age 90, both hemispheres
238.1
2094
Female, age 79, both hemispheres
180.4
2294
Male, age 66, both hemispheres
121.1
2192
Male, age 75, both hemispheres
118.0
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
159.5
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 159.5
Samples: 204
Max nTPM: 319.3
Min nTPM: 40.5
Std nTPM: 48.6
Median nTPM: 157.0
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
319.3
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
291.7
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
279.1
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
278.2
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
269.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
268.5
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
267.8
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
256.6
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
253.9
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
250.6
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
247.2
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
246.4
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
244.2
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
242.9
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
232.6
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
230.8
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
227.1
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
226.7
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
225.9
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
221.8
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
220.4
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
219.7
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
219.4
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
219.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
216.3
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
216.1
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
214.2
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
212.8
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
212.5
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
212.2
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
210.3
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
210.2
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
208.6
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
204.6
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
201.7
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
201.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
201.0
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
200.9
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
200.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
199.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
199.6
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
198.6
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
196.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
195.1
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
194.0
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
193.7
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
193.4
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
192.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
191.9
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
191.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
191.6
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
190.6
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
189.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
186.8
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
186.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
186.0
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
183.9
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
183.4
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
181.0
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
181.0
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
180.0
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
178.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
178.2
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
178.0
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
177.9
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
176.9
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
176.5
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
176.2
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
175.9
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
175.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
174.8
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
173.7
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
172.8
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
172.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
172.4
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
171.4
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
171.4
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
168.8
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
168.8
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
168.7
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
168.0
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
167.7
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
167.6
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
167.5
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
167.2
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
166.7
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
166.2
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
165.6
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
165.2
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
164.5
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
164.4
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
163.7
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
162.7
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
162.3
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
160.5
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
160.0
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
159.9
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
159.8
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
159.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
159.0
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
158.8
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
157.1
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
156.9
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
155.8
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
155.8
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
154.3
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
152.2
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
151.9
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
151.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
151.4
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
150.5
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
150.3
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
150.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
149.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
149.7
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
149.5
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
149.4
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
149.1
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
148.6
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
148.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
148.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
148.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
143.6
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
142.5
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
142.5
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
142.4
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
142.3
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
142.1
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
141.4
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
140.9
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
138.6
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
138.3
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
137.3
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
137.2
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
136.2
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
135.1
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
134.5
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
134.2
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
134.2
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
134.1
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
133.9
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
133.5
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
132.1
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
130.6
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
130.0
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
129.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
128.9
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
128.8
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
128.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
127.3
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
127.2
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
126.6
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
126.5
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
125.2
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
124.0
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
123.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
120.9
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
119.8
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
118.0
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
117.7
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
116.8
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
116.6
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
116.6
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
115.9
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
115.8
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
115.6
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
115.6
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
115.6
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
115.2
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
114.9
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
114.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
114.6
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
113.0
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
111.3
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
109.9
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
109.5
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
107.5
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
107.1
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
106.2
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
104.9
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
104.7
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
103.7
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
102.6
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
102.4
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
100.1
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
93.9
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
92.9
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
92.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
92.7
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
92.5
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
91.5
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
91.4
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
91.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
90.9
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
90.6
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
87.7
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
87.1
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
86.9
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
83.8
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
69.8
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
63.3
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
52.0
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
46.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
40.5
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.0
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 6.9
Samples: 2
Max nTPM: 10.8
Min nTPM: 3.0
Sample A
3.0
Sample B
10.8
Ventral spinal cord nTPM: 21.0
Samples: 1
Max nTPM: 21.0
Min nTPM: 21.0
Sample A
21.0
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
37.0
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 37.0
Samples: 4
Max nTPM: 75.2
Min nTPM: 3.8
Sample A
Female
3.8
Sample B
Female
45.8
Sample C
Male
75.2
Sample D
Male
23.1
Ventral spinal cord nTPM: 10.2
Samples: 4
Max nTPM: 23.8
Min nTPM: 3.5
Sample A
Female
3.5
Sample B
Female
5.2
Sample C
Male
23.8
Sample D
Male
8.4
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.5
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 14.6
Samples: 4
Max nTPM: 20.6
Min nTPM: 8.1
Sample A
11.3
Sample B
18.2
Sample C
20.6
Sample D
8.1
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.1
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 23.1
Samples: 4
Max nTPM: 41.1
Min nTPM: 11.6
Sample A
12.3
Sample A
27.4
Sample A
11.6
Sample A
41.1
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The Human Protein Atlas project is funded
