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CLDN11
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  • TISSUE

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  • CLDN11
BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:19.0 nTPM
HPA Brain:73.2 nTPM
GTEx:19.0 nTPM
Pig:144.5 nTPM
Mouse:208.9 nTPM
Allen mouse:8.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.2
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 15.9
2226 Male, age 75, left hemisphere 28.3
1961 Female, age 42, unknown 3.5
Dorsomedial nucleus
nTPM: 25.7
2017 Female, age 42, unknown 46.8
1989 Male, age 62, unknown 25.1
2041 Female, age 72, unknown 5.1
Lateral hypothalamic area
nTPM: 47.2
2271 Male, age 75, both hemispheres 73.0
2228 Male, age 66, unknown 50.8
1791 Male, age 80, right hemisphere 47.7
2412 Male, age 62, unknown 17.5
Mammillary body
nTPM: 73.2
1948 Female, age 72, unknown 85.2
1834 Female, age 42, unknown 84.2
1945 Male, age 80, right hemisphere 83.7
1923 Female, age 72, unknown 66.3
2413 Male, age 66, unknown 46.5
Paraventricular nucleus
nTPM: 52.0
2700 Male, age 62, unknown 52.0
Preoptic area
nTPM: 34.2
2414 Female, age 72, unknown 52.5
1861 Female, age 42, unknown 35.9
1907 Male, age 80, right hemisphere 14.2
Supraoptic nucleus
nTPM: 42.5
2043 Male, age 62, unknown 58.4
1894 Female, age 72, unknown 43.0
2835 Female, age 72, unknown 26.1
Ventromedial nucleus
nTPM: 5.2
1982 Female, age 72, unknown 6.1
1822 Female, age 42, unknown 4.3

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.0
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 19.0
Samples: 257

Max nTPM: 99.8
Min nTPM: 1.1
Std nTPM: 19.9
Median nTPM: 11.8
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 99.8
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 97.5
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 90.4
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 88.8
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 86.1
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 81.9
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 80.6
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 75.7
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 74.1
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 73.0
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 68.3
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 67.5
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 61.8
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 59.3
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 59.2
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 57.6
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 57.1
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 55.4
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 55.3
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 55.1
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 54.9
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 53.8
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 53.3
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 52.9
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 52.3
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 51.6
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 51.0
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 49.2
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 47.6
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 46.3
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 46.0
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 45.9
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 44.2
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 44.1
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 42.8
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 40.8
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 40.0
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 39.7
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 36.7
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 36.1
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 35.4
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 32.9
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 31.7
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 31.0
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 30.7
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 30.2
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 29.7
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 29.7
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 28.8
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 27.7
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 27.7
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 27.1
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 25.4
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 25.3
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 25.2
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 24.7
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 24.6
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 24.3
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 23.8
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 23.5
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 23.3
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 23.2
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 23.1
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 23.0
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 22.9
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 22.3
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 22.3
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 22.0
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 21.5
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 21.2
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 20.7
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 20.7
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 20.2
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 20.1
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 20.1
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 20.0
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 19.8
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 19.6
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 19.4
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 19.2
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 19.0
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 19.0
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 18.9
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 18.7
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 18.6
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 18.4
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 18.4
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 18.2
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 18.1
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 18.1
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 18.1
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 17.9
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 17.6
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 17.3
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 17.3
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 16.9
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 16.9
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 16.4
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 16.4
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 16.0
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 15.9
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 15.8
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 15.8
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 15.5
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 15.4
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 15.4
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 15.3
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 15.2
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 15.1
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 14.7
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 14.4
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 14.3
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 14.3
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 14.2
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 14.1
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 13.6
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 13.4
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 13.4
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 13.3
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 12.9
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 12.6
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 12.6
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 12.4
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 12.3
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 12.3
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 12.2
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 12.1
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 11.9
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 11.8
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 11.7
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 11.7
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 11.6
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 11.5
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 11.4
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 11.2
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 10.9
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 10.8
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 10.6
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 10.4
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 10.1
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 10.1
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 10.1
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 9.8
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 9.8
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 9.7
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 9.7
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 9.5
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 9.4
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 9.1
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 9.0
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 8.9
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 8.8
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 8.7
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 8.6
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 8.6
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 8.6
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 8.6
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 8.6
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 8.4
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 8.4
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 8.2
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 8.1
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 8.1
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 8.0
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 8.0
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 7.9
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 7.8
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 7.7
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 7.4
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 7.1
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 7.0
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 6.8
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 6.7
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 6.6
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 6.5
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 6.5
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 6.5
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 6.4
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 6.3
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 6.1
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 6.1
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 6.1
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 6.0
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 6.0
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 6.0
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 6.0
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 5.9
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 5.9
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 5.8
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 5.8
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 5.7
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 5.7
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 5.6
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 5.5
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 5.5
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 5.4
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 5.4
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 5.3
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 5.2
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 5.2
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 5.1
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 5.1
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 5.0
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 5.0
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 4.9
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 4.7
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 4.7
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 4.6
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 4.6
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 4.6
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 4.5
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 4.5
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 4.4
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 4.4
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 4.4
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 4.3
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 4.3
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 4.3
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 4.2
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 4.1
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 4.1
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 4.1
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 4.1
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 4.0
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 3.9
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 3.9
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 3.9
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 3.9
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 3.9
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 3.8
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 3.8
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 3.7
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 3.6
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 3.5
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 3.5
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 3.4
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 3.4
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 3.0
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 2.9
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 2.9
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 2.8
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 2.7
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 2.7
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 2.5
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 2.4
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 2.4
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 2.4
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 2.1
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 2.0
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 2.0
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 2.0
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 1.9
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 1.7
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 1.6
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 1.5
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 1.4
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 1.1
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.5
Pig sample Sample description nTPM
Hypothalamus
nTPM: 144.5
Samples: 4

Max nTPM: 191.9
Min nTPM: 70.0
Sample A Female 158.1
Sample B Female 191.9
Sample C Male 157.8
Sample D Male 70.0

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

208.9
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 208.8
Samples: 4

Max nTPM: 265.7
Min nTPM: 153.0
Sample A Male 153.0
Sample B Male 180.3
Sample C Female 265.7
Sample D Female 236.3

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.3
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 8.3
74581223 Antisense, RP_060215_02_G11, Mouse strain C57BL/6J (56 days, male) 9.6
77280580 Antisense, RP_070116_01_G04, Mouse strain C57BL/6J (56 days, male) 8.3
77924438 Antisense, RP_070219_01_H08, Mouse strain C57BL/6J (56 days, male) 6.8

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