MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.3 nTPM
HPA Brain:92.8 nTPM
GTEx:42.3 nTPM
FANTOM5:1003.4 Scaled Tags Per Million
Pig:331.5 nTPM
Mouse:343.7 nTPM
Allen mouse:12.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 92.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.5
1870 Female, age 42, unknown 98.3
2411 Female, age 72, unknown 95.7
1833 Male, age 53, unknown 91.2
1830 Male, age 51, unknown 90.6
2019 Male, age 18, unknown 71.3
2828 Female, age 72, unknown 70.5
2586 Male, age 75, left hemisphere 49.8
1827 Male, age 72, unknown 49.5
2219 Male, age 76, both hemispheres 45.1
2666 Male, age 74, left hemisphere 32.5
Dorsal raphe nucleus
nTPM: 56.9
2750 Male, age 76, both hemispheres 126.3
2016 Female, age 72, unknown 57.5
1828 Male, age 53, unknown 45.9
2298 Female, age 72, unknown 29.7
2047 Male, age 72, unknown 25.0
Inferior colliculus
nTPM: 44.3
2097 Female, age 72, unknown 49.3
1848 Female, age 42, unknown 45.9
1890 Male, age 53, unknown 42.1
2849 Male, age 72, unknown 39.9
Median raphe nucleus
nTPM: 42.2
2220 Male, age 76, midline 42.2
Periaquaductal grey, anterior
nTPM: 46.8
2502 Female, age 75, unknown 62.5
1947 Male, age 18, unknown 43.8
1795 Male, age 51, unknown 34.2
Periaquaductal grey, dorsal
nTPM: 32.4
2464 Female, age 72, unknown 53.4
1831 Male, age 72, unknown 37.2
2850 Male, age 76, both hemispheres 23.7
1840 Male, age 53, unknown 15.4
Periaquaductal grey, lateral
nTPM: 36.5
2272 Male, age 74, both hemispheres 45.2
2053 Male, age 18, unknown 36.5
2140 Male, age 76, both hemispheres 28.0
Pretectal area
nTPM: 46.2
2316 Male, age 76, right hemisphere 71.2
1815 Male, age 53, unknown 62.2
2667 Female, age 75, unknown 61.4
2273 Male, age 74, both hemispheres 49.5
2407 Male, age 75, both hemispheres 47.5
2007 Male, age 72, unknown 46.5
1817 Female, age 42, unknown 45.5
2825 Male, age 18, unknown 45.3
2224 Female, age 72, unknown 36.4
1816 Male, age 51, unknown 22.1
1944 Female, age 72, unknown 20.3
Red nucleus
nTPM: 92.8
1821 Female, age 72, unknown 124.0
2823 Male, age 76, right hemisphere 122.6
2785 Male, age 18, unknown 108.4
1865 Male, age 51, unknown 107.1
1904 Male, age 53, unknown 106.0
2227 Male, age 72, unknown 104.6
2769 Male, age 72, unknown 103.7
2503 Female, age 72, unknown 91.7
1954 Female, age 42, unknown 89.2
2584 Male, age 75, left hemisphere 61.4
2588 Male, age 74, left hemisphere 50.5
2725 Female, age 75, unknown 44.0
Substantia nigra
nTPM: 41.7
1851 Male, age 51, unknown 58.7
1889 Female, age 72, unknown 53.6
2590 Female, age 75, unknown 48.8
2699 Male, age 18, unknown 45.0
2583 Male, age 75, right hemisphere 44.4
1941 Male, age 53, unknown 43.8
2409 Female, age 72, unknown 40.6
2241 Male, age 72, unknown 33.9
1916 Female, age 42, unknown 33.1
2665 Male, age 74, both hemispheres 14.8
Superior colliculus
nTPM: 60.8
1913 Female, age 42, unknown 107.9
1995 Male, age 72, unknown 95.9
1895 Male, age 76, right hemisphere 71.0
2587 Male, age 74, left hemisphere 68.9
1839 Male, age 51, unknown 65.1
1796 Male, age 53, unknown 51.2
2668 Female, age 75, unknown 46.8
2261 Male, age 18, unknown 35.8
2664 Male, age 75, both hemispheres 32.7
2087 Female, age 72, unknown 32.4
Ventral tegmental area
nTPM: 61.6
2223 Female, age 72, unknown 87.1
2410 Female, age 72, unknown 66.7
2218 Male, age 76, both hemispheres 60.0
1942 Male, age 51, unknown 53.6
1915 Female, age 42, unknown 51.6
2021 Male, age 53, unknown 50.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.3
Samples: 183

Max nTPM: 142.5
Min nTPM: 1.2
Std nTPM: 27.3
Median nTPM: 33.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 142.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 137.7
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 125.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 119.5
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 110.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 105.7
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 104.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 101.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 99.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 94.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 93.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1003.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1003.4
FF:10158-103A5 76 years, female 1003.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 331.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 331.4
Samples: 4

Max nTPM: 568.4
Min nTPM: 216.1
Sample A Female 297.0
Sample B Female 244.0
Sample C Male 216.1
Sample D Male 568.4
Midbrain
nTPM: 331.5
Samples: 4

Max nTPM: 707.6
Min nTPM: 142.3
Sample A Female 707.6
Sample B Female 314.6
Sample C Male 142.3
Sample D Male 161.6
Periaqueductal gray
nTPM: 189.0
Samples: 3

Max nTPM: 227.7
Min nTPM: 128.2
Sample B Female 227.7
Sample C Male 128.2
Sample D Male 211.0
Superior colliculi
nTPM: 325.1
Samples: 4

Max nTPM: 420.0
Min nTPM: 249.6
Sample A Female 327.6
Sample B Female 420.0
Sample C Male 249.6
Sample D Male 303.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 343.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 343.7
Samples: 4

Max nTPM: 389.1
Min nTPM: 280.6
Sample A Male 317.7
Sample B Male 280.6
Sample C Female 389.1
Sample D Female 387.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.1
74581223 Antisense, RP_060215_02_G11, Mouse strain C57BL/6J (56 days, male) 13.9
77280580 Antisense, RP_070116_01_G04, Mouse strain C57BL/6J (56 days, male) 11.5
77924438 Antisense, RP_070219_01_H08, Mouse strain C57BL/6J (56 days, male) 10.9

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