A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.0
nTPM
Monaco:
13.6
nTPM
Schmiedel:
89.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.0
HPA sample
nTPM
Memory B-cell nTPM: 3.9
Samples: 6
Max nTPM: 7.6
Min nTPM: 2.2
P10809_1017
4.8
P10809_1025
2.2
P10809_1044
7.6
P10809_1063
3.1
P10809_1092
2.3
P10809_1105
3.2
Naive B-cell nTPM: 4.0
Samples: 6
Max nTPM: 6.0
Min nTPM: 3.0
P10809_1011
3.4
P10809_1029
3.0
P10809_1048
3.6
P10809_1067
6.0
P10809_1091
3.8
P10809_1104
4.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 9.9
Samples: 4
Max nTPM: 15.5
Min nTPM: 5.7
RHH5310_R3677
5.7
RHH5218_R3590
15.5
RHH5247_R3619
6.3
RHH5276_R3648
12.1
Naive B-cell nTPM: 12.2
Samples: 4
Max nTPM: 15.9
Min nTPM: 9.7
RHH5308_R3675
10.1
RHH5216_R3588
15.9
RHH5245_R3617
9.7
RHH5274_R3646
13.1
Non-switched memory B-cell nTPM: 12.2
Samples: 4
Max nTPM: 25.6
Min nTPM: 6.7
RHH5309_R3676
7.8
RHH5217_R3589
25.6
RHH5246_R3618
6.7
RHH5275_R3647
8.6
Plasmablast nTPM: 9.8
Samples: 4
Max nTPM: 14.8
Min nTPM: 6.4
RHH5312_R3679
6.4
RHH5220_R3592
14.8
RHH5249_R3621
8.9
RHH5278_R3650
8.9
Switched memory B-cell nTPM: 13.6
Samples: 4
Max nTPM: 18.4
Min nTPM: 9.3
RHH5311_R3678
14.4
RHH5219_R3591
18.4
RHH5248_R3620
9.3
RHH5277_R3649
12.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
89.4
Schmiedel sample id
TPM
Naive B-cell TPM: 89.4
Samples: 91
Max TPM: 140.6
Min TPM: 19.4
B_CELL_NAIVE_1
140.6
B_CELL_NAIVE_2
139.2
B_CELL_NAIVE_3
135.5
B_CELL_NAIVE_4
135.4
B_CELL_NAIVE_5
134.9
B_CELL_NAIVE_6
134.6
B_CELL_NAIVE_7
132.7
B_CELL_NAIVE_8
132.4
B_CELL_NAIVE_9
132.1
B_CELL_NAIVE_10
129.4
B_CELL_NAIVE_11
126.4
B_CELL_NAIVE_12
123.5
B_CELL_NAIVE_13
122.0
B_CELL_NAIVE_14
121.8
B_CELL_NAIVE_15
120.3
B_CELL_NAIVE_16
118.5
B_CELL_NAIVE_17
115.5
B_CELL_NAIVE_18
114.4
B_CELL_NAIVE_19
113.9
B_CELL_NAIVE_20
113.7
B_CELL_NAIVE_21
112.1
B_CELL_NAIVE_22
110.7
B_CELL_NAIVE_23
110.1
B_CELL_NAIVE_24
109.5
B_CELL_NAIVE_25
108.9
B_CELL_NAIVE_26
108.6
B_CELL_NAIVE_27
108.0
B_CELL_NAIVE_28
107.9
B_CELL_NAIVE_29
106.0
B_CELL_NAIVE_30
105.9
B_CELL_NAIVE_31
103.8
B_CELL_NAIVE_32
103.5
B_CELL_NAIVE_33
102.9
B_CELL_NAIVE_34
102.6
B_CELL_NAIVE_35
101.9
B_CELL_NAIVE_36
101.2
B_CELL_NAIVE_37
101.2
B_CELL_NAIVE_38
100.8
B_CELL_NAIVE_39
100.4
B_CELL_NAIVE_40
99.9
B_CELL_NAIVE_41
98.4
B_CELL_NAIVE_42
98.2
B_CELL_NAIVE_43
97.5
B_CELL_NAIVE_44
97.3
B_CELL_NAIVE_45
96.8
B_CELL_NAIVE_46
95.6
B_CELL_NAIVE_47
95.0
B_CELL_NAIVE_48
93.9
B_CELL_NAIVE_49
93.6
B_CELL_NAIVE_50
92.7
B_CELL_NAIVE_51
92.0
B_CELL_NAIVE_52
91.5
B_CELL_NAIVE_53
89.8
B_CELL_NAIVE_54
88.6
B_CELL_NAIVE_55
87.7
B_CELL_NAIVE_56
85.7
B_CELL_NAIVE_57
85.3
B_CELL_NAIVE_58
83.3
B_CELL_NAIVE_59
81.5
B_CELL_NAIVE_60
79.5
B_CELL_NAIVE_61
78.4
B_CELL_NAIVE_62
77.5
B_CELL_NAIVE_63
77.4
B_CELL_NAIVE_64
77.3
B_CELL_NAIVE_65
75.6
B_CELL_NAIVE_66
74.3
B_CELL_NAIVE_67
72.4
B_CELL_NAIVE_68
71.4
B_CELL_NAIVE_69
70.8
B_CELL_NAIVE_70
67.5
B_CELL_NAIVE_71
66.0
B_CELL_NAIVE_72
64.9
B_CELL_NAIVE_73
64.8
B_CELL_NAIVE_74
62.4
B_CELL_NAIVE_75
58.8
B_CELL_NAIVE_76
54.4
B_CELL_NAIVE_77
54.1
B_CELL_NAIVE_78
53.5
B_CELL_NAIVE_79
52.0
B_CELL_NAIVE_80
50.4
B_CELL_NAIVE_81
44.9
B_CELL_NAIVE_82
41.1
B_CELL_NAIVE_83
36.8
B_CELL_NAIVE_84
35.4
B_CELL_NAIVE_85
33.7
B_CELL_NAIVE_86
32.7
B_CELL_NAIVE_87
32.0
B_CELL_NAIVE_88
25.3
B_CELL_NAIVE_89
21.9
B_CELL_NAIVE_90
19.8
B_CELL_NAIVE_91
19.4
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