A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.8
nTPM
Monaco:
39.1
nTPM
Schmiedel:
295.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.8
HPA sample
nTPM
Classical monocyte nTPM: 9.5
Samples: 6
Max nTPM: 11.9
Min nTPM: 6.1
P10809_1003
11.9
P10809_1020
8.4
P10809_1039
6.1
P10809_1058
10.7
P10809_1080
9.7
P10809_1107
10.0
Intermediate monocyte nTPM: 10.0
Samples: 6
Max nTPM: 11.2
Min nTPM: 7.8
P10809_1004
11.1
P10809_1023
7.8
P10809_1042
9.9
P10809_1061
10.6
P10809_1081
11.2
P10809_1108
9.5
Non-classical monocyte nTPM: 10.8
Samples: 5
Max nTPM: 13.3
Min nTPM: 9.0
P10809_1005
11.6
P10809_1053
13.3
P10809_1072
9.5
P10809_1082
9.0
P10809_1109
10.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.1
Monaco sample
nTPM
Classical monocyte nTPM: 39.1
Samples: 4
Max nTPM: 53.0
Min nTPM: 28.0
RHH5313_R3680
28.0
RHH5221_R3593
53.0
RHH5250_R3622
40.2
RHH5279_R3651
35.3
Intermediate monocyte nTPM: 36.1
Samples: 4
Max nTPM: 44.3
Min nTPM: 20.6
RHH5314_R3681
20.6
RHH5222_R3594
44.3
RHH5251_R3623
38.9
RHH5280_R3652
40.5
Non-classical monocyte nTPM: 35.9
Samples: 4
Max nTPM: 42.0
Min nTPM: 23.9
RHH5315_R3682
23.9
RHH5223_R3595
42.0
RHH5252_R3624
37.3
RHH5281_R3653
40.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
295.5
Schmiedel sample id
TPM
Classical monocyte TPM: 295.5
Samples: 91
Max TPM: 398.4
Min TPM: 166.4
MONOCYTES_1
398.4
MONOCYTES_2
393.3
MONOCYTES_3
389.2
MONOCYTES_4
385.0
MONOCYTES_5
384.1
MONOCYTES_6
382.8
MONOCYTES_7
377.4
MONOCYTES_8
373.0
MONOCYTES_9
364.8
MONOCYTES_10
363.5
MONOCYTES_11
362.6
MONOCYTES_12
361.7
MONOCYTES_13
360.5
MONOCYTES_14
359.2
MONOCYTES_15
356.2
MONOCYTES_16
355.0
MONOCYTES_17
353.6
MONOCYTES_18
353.5
MONOCYTES_19
351.0
MONOCYTES_20
350.0
MONOCYTES_21
350.0
MONOCYTES_22
345.9
MONOCYTES_23
343.4
MONOCYTES_24
340.1
MONOCYTES_25
338.1
MONOCYTES_26
337.0
MONOCYTES_27
334.8
MONOCYTES_28
334.3
MONOCYTES_29
333.9
MONOCYTES_30
331.0
MONOCYTES_31
329.7
MONOCYTES_32
327.3
MONOCYTES_33
326.3
MONOCYTES_34
322.7
MONOCYTES_35
321.7
MONOCYTES_36
320.4
MONOCYTES_37
319.6
MONOCYTES_38
318.9
MONOCYTES_39
318.7
MONOCYTES_40
318.2
MONOCYTES_41
313.5
MONOCYTES_42
311.4
MONOCYTES_43
310.8
MONOCYTES_44
307.1
MONOCYTES_45
303.3
MONOCYTES_46
302.5
MONOCYTES_47
301.8
MONOCYTES_48
298.4
MONOCYTES_49
295.8
MONOCYTES_50
293.3
MONOCYTES_51
293.0
MONOCYTES_52
288.4
MONOCYTES_53
285.8
MONOCYTES_54
282.6
MONOCYTES_55
280.5
MONOCYTES_56
279.3
MONOCYTES_57
277.4
MONOCYTES_58
277.3
MONOCYTES_59
276.8
MONOCYTES_60
273.7
MONOCYTES_61
272.4
MONOCYTES_62
270.2
MONOCYTES_63
267.4
MONOCYTES_64
266.9
MONOCYTES_65
260.8
MONOCYTES_66
260.3
MONOCYTES_67
257.6
MONOCYTES_68
255.1
MONOCYTES_69
254.6
MONOCYTES_70
248.1
MONOCYTES_71
243.0
MONOCYTES_72
242.5
MONOCYTES_73
240.5
MONOCYTES_74
229.9
MONOCYTES_75
229.0
MONOCYTES_76
228.4
MONOCYTES_77
227.3
MONOCYTES_78
225.8
MONOCYTES_79
224.0
MONOCYTES_80
220.1
MONOCYTES_81
219.4
MONOCYTES_82
210.8
MONOCYTES_83
205.6
MONOCYTES_84
201.6
MONOCYTES_85
200.5
MONOCYTES_86
193.0
MONOCYTES_87
187.7
MONOCYTES_88
186.1
MONOCYTES_89
181.4
MONOCYTES_90
177.0
MONOCYTES_91
166.4
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Non-classical monocyte TPM: 293.3
Samples: 90
Max TPM: 447.6
Min TPM: 85.3
M2_1
447.6
M2_2
425.4
M2_3
424.7
M2_4
423.6
M2_5
418.4
M2_6
415.5
M2_7
413.4
M2_8
402.3
M2_9
402.3
M2_10
400.5
M2_11
400.3
M2_12
397.7
M2_13
394.9
M2_14
393.4
M2_15
390.5
M2_16
389.7
M2_17
385.5
M2_18
384.6
M2_19
375.4
M2_20
364.8
M2_21
364.2
M2_22
361.4
M2_23
360.6
M2_24
359.6
M2_25
359.3
M2_26
357.5
M2_27
354.1
M2_28
348.8
M2_29
343.8
M2_30
342.7
M2_31
341.6
M2_32
338.4
M2_33
335.4
M2_34
333.3
M2_35
332.9
M2_36
332.5
M2_37
332.4
M2_38
331.3
M2_39
330.4
M2_40
323.0
M2_41
321.9
M2_42
321.3
M2_43
319.6
M2_44
310.3
M2_45
302.7
M2_46
302.2
M2_47
301.9
M2_48
301.0
M2_49
301.0
M2_50
295.2
M2_51
294.5
M2_52
294.4
M2_53
292.3
M2_54
290.3
M2_55
287.6
M2_56
276.2
M2_57
271.4
M2_58
271.2
M2_59
263.1
M2_60
258.9
M2_61
254.8
M2_62
244.6
M2_63
244.4
M2_64
243.7
M2_65
243.1
M2_66
241.6
M2_67
241.1
M2_68
239.5
M2_69
227.3
M2_70
223.7
M2_71
215.7
M2_72
215.0
M2_73
205.9
M2_74
200.9
M2_75
187.0
M2_76
186.4
M2_77
182.1
M2_78
176.3
M2_79
172.8
M2_80
161.7
M2_81
157.8
M2_82
155.5
M2_83
146.6
M2_84
144.5
M2_85
144.3
M2_86
128.5
M2_87
115.1
M2_88
111.5
M2_89
86.0
M2_90
85.3
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