A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.4
nTPM
Monaco:
15.9
nTPM
Schmiedel:
224.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.4
HPA sample
nTPM
NK-cell nTPM: 6.4
Samples: 6
Max nTPM: 19.0
Min nTPM: 2.0
P10809_1013
3.2
P10809_1033
2.4
P10809_1052
2.0
P10809_1071
8.8
P10809_1093
19.0
P10809_1103
2.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.9
Monaco sample
nTPM
NK-cell nTPM: 15.9
Samples: 4
Max nTPM: 21.5
Min nTPM: 12.6
RHH5316_R3683
12.6
RHH5224_R3596
21.5
RHH5253_R3625
12.6
RHH5282_R3654
16.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
224.9
Schmiedel sample id
TPM
NK-cell TPM: 224.9
Samples: 90
Max TPM: 378.3
Min TPM: 71.7
NK_1
378.3
NK_2
368.9
NK_3
361.9
NK_4
347.2
NK_5
346.1
NK_6
346.0
NK_7
345.4
NK_8
340.7
NK_9
340.1
NK_10
331.8
NK_11
329.2
NK_12
327.3
NK_13
322.6
NK_14
320.2
NK_15
319.4
NK_16
313.8
NK_17
310.1
NK_18
309.0
NK_19
301.9
NK_20
298.7
NK_21
294.3
NK_22
290.1
NK_23
287.1
NK_24
285.4
NK_25
278.7
NK_26
278.1
NK_27
277.4
NK_28
270.1
NK_29
262.2
NK_30
262.1
NK_31
258.2
NK_32
256.2
NK_33
254.9
NK_34
254.9
NK_35
244.1
NK_36
242.3
NK_37
241.9
NK_38
238.4
NK_39
236.7
NK_40
236.5
NK_41
236.2
NK_42
235.0
NK_43
232.6
NK_44
232.4
NK_45
231.2
NK_46
230.8
NK_47
229.8
NK_48
222.7
NK_49
222.2
NK_50
221.5
NK_51
220.5
NK_52
215.9
NK_53
210.8
NK_54
197.2
NK_55
196.1
NK_56
193.0
NK_57
192.5
NK_58
187.7
NK_59
184.9
NK_60
184.5
NK_61
182.0
NK_62
181.7
NK_63
181.1
NK_64
174.6
NK_65
171.7
NK_66
163.5
NK_67
163.0
NK_68
159.3
NK_69
158.9
NK_70
156.5
NK_71
155.0
NK_72
154.7
NK_73
151.4
NK_74
148.6
NK_75
141.3
NK_76
139.6
NK_77
135.3
NK_78
133.5
NK_79
121.7
NK_80
120.2
NK_81
119.8
NK_82
115.2
NK_83
112.6
NK_84
107.3
NK_85
106.9
NK_86
92.6
NK_87
84.4
NK_88
75.7
NK_89
72.4
NK_90
71.7
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