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  • STMN4
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:151.7 nTPM
HPA Brain:134.2 nTPM
GTEx:151.7 nTPM
FANTOM5:143.5 Scaled Tags Per Million
Pig:123.0 nTPM
Mouse:289.9 nTPM
Allen mouse:11.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.2
Sample id Sample description nTPM
Amygdala
nTPM: 134.2
2814 Male, age 76, right hemisphere 199.2
2695 Female, age 67, right hemisphere 125.3
2517 Female, age 94, left hemisphere 124.0
1987 Female, age 91, left hemisphere 113.4
2514 Male, age 75, right hemisphere 108.9
Basal amygdala
nTPM: 120.9
1955 Male, age 76, both hemispheres 135.1
2827 Female, age 67, right hemisphere 133.2
2110 Male, age 80, left hemisphere 130.7
2685 Female, age 94, left hemisphere 126.3
2243 Female, age 91, right hemisphere 112.6
2609 Male, age 75, right hemisphere 87.5
Central amygdala
nTPM: 123.3
1905 Male, age 76, both hemispheres 167.3
2826 Female, age 94, left hemisphere 133.6
2239 Male, age 80, left hemisphere 129.6
2701 Female, age 91, right hemisphere 105.0
2515 Male, age 75, right hemisphere 81.1
Corticomedial amygdala
nTPM: 121.8
2535 Female, age 67, right hemisphere 170.0
2240 Male, age 76, both hemispheres 126.0
2829 Male, age 80, left hemisphere 122.3
2429 Female, age 94, left hemisphere 119.5
2242 Female, age 91, right hemisphere 100.8
2428 Male, age 75, right hemisphere 92.0
Lateral amygdala
nTPM: 128.9
1883 Male, age 76, both hemispheres 157.5
2534 Female, age 94, left hemisphere 155.9
2830 Female, age 67, right hemisphere 140.7
2256 Male, age 80, left hemisphere 125.4
2255 Female, age 91, right hemisphere 101.5
2516 Male, age 75, right hemisphere 92.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 151.7
Samples: 181

Max nTPM: 627.6
Min nTPM: 49.6
Std nTPM: 70.7
Median nTPM: 135.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 627.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 400.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 366.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 316.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 299.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 287.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 278.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 277.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 277.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 274.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 268.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 258.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 255.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 250.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 249.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 249.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 247.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 246.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 239.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 225.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 225.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 224.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 223.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 221.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 220.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 219.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 212.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 209.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 209.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 208.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 208.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 207.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 206.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 205.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 200.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 200.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 199.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 197.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 192.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 188.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 186.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 185.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 185.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 184.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 182.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 181.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 179.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 178.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 176.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 176.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 175.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 174.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 173.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 172.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 171.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 170.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 170.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 170.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 169.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 168.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 168.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 167.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 166.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 162.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 161.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 160.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 160.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 157.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 157.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 156.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 154.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 154.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 151.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 147.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 146.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 146.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 145.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 145.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 144.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 144.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 144.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 143.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 141.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 141.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 138.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 138.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 138.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 137.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 137.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 135.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 135.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 134.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 134.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 133.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 133.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 132.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 131.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 131.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 130.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 130.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 129.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 128.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 128.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 128.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 128.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 126.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 124.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 123.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 122.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 122.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 122.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 122.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 121.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 121.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 119.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 118.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 117.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 116.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 115.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 115.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 114.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 114.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 114.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 114.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 113.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 112.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 111.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 111.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 111.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 110.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 106.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 105.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 105.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 103.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 103.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 102.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 102.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 102.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 101.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 101.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 100.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 97.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 97.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 96.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 96.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 95.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 95.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 94.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 93.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 93.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 92.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 91.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 91.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 91.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 91.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 90.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 90.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 89.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 89.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 88.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 87.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 86.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 86.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 86.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 85.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 84.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 81.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 79.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 78.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 77.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 76.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 74.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 71.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 70.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 68.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 63.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 61.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 55.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 54.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 51.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 49.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

143.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 143.5
FF:10151-102I7 76 years, female 143.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.0
Pig sample Sample description nTPM
Amygdala
nTPM: 123.0
Samples: 4

Max nTPM: 162.1
Min nTPM: 87.7
Sample A Female 162.1
Sample B Female 128.2
Sample C Male 114.0
Sample D Male 87.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

289.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 289.9
Samples: 4

Max nTPM: 313.6
Min nTPM: 276.6
Sample A Male 282.7
Sample B Male 286.6
Sample C Female 313.6
Sample D Female 276.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.6
1006 Antisense, RP_Baylor_103218, Mouse strain C57BL/6J (56 days, male) 11.6
1007 Antisense, RP_Baylor_103218, Mouse strain C57BL/6J (56 days, male) 8.2

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