We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
STMN4
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • STMN4
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:426.0 nTPM
HPA Brain:191.9 nTPM
GTEx:426.0 nTPM
FANTOM5:57.4 Scaled Tags Per Million
Pig:369.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 146.0
1981 Female, age 72, midline 173.8
2194 Female, age 79, both hemispheres 169.7
2816 Male, age 47, midline 168.2
2048 Male, age 55, midline 119.0
2565 Male, age 75, midline 99.1
Cervical spinal cord, dorsal horn
nTPM: 191.9
2296 Male, age 66, both hemispheres 332.4
2173 Female, age 72, unknown 237.2
2069 Male, age 47, both hemispheres 174.8
1877 Male, age 55, unknown 155.6
2297 Male, age 75, both hemispheres 150.9
2721 Male, age 90, both hemispheres 100.2
Cervical spinal cord, ventral horn
nTPM: 164.0
2068 Male, age 55, unknown 195.5
2820 Female, age 79, both hemispheres 185.5
2098 Female, age 72, unknown 154.9
2480 Male, age 75, both hemispheres 153.7
2809 Male, age 90, both hemispheres 153.3
2295 Male, age 66, both hemispheres 140.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

426.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 426.0
Samples: 204

Max nTPM: 1199.2
Min nTPM: 46.6
Std nTPM: 242.6
Median nTPM: 390.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1199.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1176.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1142.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1034.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1028.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 963.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 921.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 898.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 889.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 886.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 875.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 864.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 854.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 817.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 814.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 786.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 779.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 773.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 772.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 769.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 760.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 744.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 735.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 729.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 727.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 721.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 714.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 702.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 697.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 690.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 686.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 683.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 681.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 678.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 677.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 668.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 659.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 651.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 650.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 647.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 639.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 634.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 619.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 610.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 602.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 591.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 590.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 587.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 577.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 576.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 575.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 570.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 569.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 560.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 558.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 539.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 535.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 529.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 527.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 525.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 521.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 518.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 517.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 515.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 514.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 504.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 504.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 502.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 502.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 499.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 494.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 489.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 486.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 479.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 470.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 466.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 465.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 463.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 463.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 458.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 455.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 440.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 440.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 438.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 437.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 436.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 435.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 434.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 431.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 431.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 422.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 418.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 414.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 413.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 413.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 406.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 401.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 400.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 396.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 395.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 391.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 391.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 390.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 389.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 388.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 388.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 384.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 383.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 382.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 381.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 380.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 379.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 377.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 373.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 370.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 362.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 361.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 361.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 360.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 360.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 358.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 354.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 354.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 347.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 344.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 343.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 336.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 334.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 333.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 331.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 329.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 327.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 322.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 318.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 317.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 316.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 313.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 307.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 305.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 303.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 300.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 300.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 297.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 295.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 292.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 286.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 284.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 280.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 279.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 278.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 278.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 277.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 268.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 262.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 257.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 256.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 241.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 230.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 223.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 215.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 214.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 206.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 200.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 190.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 185.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 176.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 167.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 167.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 158.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 154.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 146.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 142.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 137.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 136.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 135.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 134.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 126.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 125.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 122.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 121.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 120.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 120.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 119.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 115.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 115.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 110.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 107.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 98.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 98.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 97.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 96.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 95.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 93.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 91.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 91.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 89.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 85.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 80.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 79.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 75.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 72.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 58.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 48.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 46.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

57.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 57.4
FF:10181-103D1 60 years, female 80.4
FF:10159-103A6 76 years, female 34.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

369.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 293.2
Samples: 4

Max nTPM: 319.9
Min nTPM: 240.6
Sample A Female 303.3
Sample B Female 309.1
Sample C Male 240.6
Sample D Male 319.9
Ventral spinal cord
nTPM: 369.8
Samples: 4

Max nTPM: 451.4
Min nTPM: 324.8
Sample A Female 324.8
Sample B Female 363.2
Sample C Male 339.6
Sample D Male 451.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo