A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.2
nTPM
Monaco:
26.2
nTPM
Schmiedel:
86.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.2
HPA sample
nTPM
Memory B-cell nTPM: 6.2
Samples: 6
Max nTPM: 9.2
Min nTPM: 3.3
P10809_1017
6.5
P10809_1025
6.0
P10809_1044
9.2
P10809_1063
3.9
P10809_1092
3.3
P10809_1105
8.3
Naive B-cell nTPM: 5.2
Samples: 6
Max nTPM: 8.6
Min nTPM: 4.2
P10809_1011
4.4
P10809_1029
4.4
P10809_1048
8.6
P10809_1067
5.1
P10809_1091
4.2
P10809_1104
4.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 20.7
Samples: 4
Max nTPM: 23.9
Min nTPM: 16.7
RHH5310_R3677
16.7
RHH5218_R3590
23.9
RHH5247_R3619
18.5
RHH5276_R3648
23.6
Naive B-cell nTPM: 13.4
Samples: 4
Max nTPM: 16.6
Min nTPM: 8.8
RHH5308_R3675
16.0
RHH5216_R3588
8.8
RHH5245_R3617
12.2
RHH5274_R3646
16.6
Non-switched memory B-cell nTPM: 21.2
Samples: 4
Max nTPM: 26.0
Min nTPM: 17.6
RHH5309_R3676
17.6
RHH5217_R3589
21.6
RHH5246_R3618
26.0
RHH5275_R3647
19.7
Plasmablast nTPM: 11.6
Samples: 4
Max nTPM: 14.8
Min nTPM: 8.7
RHH5312_R3679
9.4
RHH5220_R3592
13.6
RHH5249_R3621
14.8
RHH5278_R3650
8.7
Switched memory B-cell nTPM: 26.2
Samples: 4
Max nTPM: 30.5
Min nTPM: 21.2
RHH5311_R3678
30.5
RHH5219_R3591
24.9
RHH5248_R3620
21.2
RHH5277_R3649
28.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.7
Schmiedel sample id
TPM
Naive B-cell TPM: 86.7
Samples: 91
Max TPM: 138.0
Min TPM: 46.1
B_CELL_NAIVE_1
138.0
B_CELL_NAIVE_2
120.7
B_CELL_NAIVE_3
118.9
B_CELL_NAIVE_4
115.5
B_CELL_NAIVE_5
115.4
B_CELL_NAIVE_6
113.7
B_CELL_NAIVE_7
112.3
B_CELL_NAIVE_8
106.8
B_CELL_NAIVE_9
106.0
B_CELL_NAIVE_10
105.9
B_CELL_NAIVE_11
105.2
B_CELL_NAIVE_12
104.8
B_CELL_NAIVE_13
103.3
B_CELL_NAIVE_14
103.0
B_CELL_NAIVE_15
101.3
B_CELL_NAIVE_16
100.7
B_CELL_NAIVE_17
100.7
B_CELL_NAIVE_18
98.6
B_CELL_NAIVE_19
98.2
B_CELL_NAIVE_20
97.1
B_CELL_NAIVE_21
96.8
B_CELL_NAIVE_22
96.5
B_CELL_NAIVE_23
96.1
B_CELL_NAIVE_24
96.0
B_CELL_NAIVE_25
95.7
B_CELL_NAIVE_26
95.1
B_CELL_NAIVE_27
94.8
B_CELL_NAIVE_28
94.7
B_CELL_NAIVE_29
94.4
B_CELL_NAIVE_30
93.9
B_CELL_NAIVE_31
93.5
B_CELL_NAIVE_32
93.3
B_CELL_NAIVE_33
93.0
B_CELL_NAIVE_34
93.0
B_CELL_NAIVE_35
92.0
B_CELL_NAIVE_36
91.6
B_CELL_NAIVE_37
91.2
B_CELL_NAIVE_38
90.7
B_CELL_NAIVE_39
90.4
B_CELL_NAIVE_40
89.7
B_CELL_NAIVE_41
89.4
B_CELL_NAIVE_42
89.1
B_CELL_NAIVE_43
88.9
B_CELL_NAIVE_44
88.2
B_CELL_NAIVE_45
88.2
B_CELL_NAIVE_46
88.0
B_CELL_NAIVE_47
87.2
B_CELL_NAIVE_48
86.8
B_CELL_NAIVE_49
86.5
B_CELL_NAIVE_50
85.4
B_CELL_NAIVE_51
85.2
B_CELL_NAIVE_52
84.9
B_CELL_NAIVE_53
84.1
B_CELL_NAIVE_54
83.9
B_CELL_NAIVE_55
83.7
B_CELL_NAIVE_56
83.6
B_CELL_NAIVE_57
83.5
B_CELL_NAIVE_58
83.1
B_CELL_NAIVE_59
82.4
B_CELL_NAIVE_60
82.3
B_CELL_NAIVE_61
82.2
B_CELL_NAIVE_62
81.9
B_CELL_NAIVE_63
81.8
B_CELL_NAIVE_64
81.0
B_CELL_NAIVE_65
80.9
B_CELL_NAIVE_66
79.8
B_CELL_NAIVE_67
76.4
B_CELL_NAIVE_68
76.2
B_CELL_NAIVE_69
75.6
B_CELL_NAIVE_70
75.4
B_CELL_NAIVE_71
75.3
B_CELL_NAIVE_72
74.9
B_CELL_NAIVE_73
74.4
B_CELL_NAIVE_74
74.2
B_CELL_NAIVE_75
71.9
B_CELL_NAIVE_76
71.9
B_CELL_NAIVE_77
71.1
B_CELL_NAIVE_78
70.8
B_CELL_NAIVE_79
69.0
B_CELL_NAIVE_80
66.8
B_CELL_NAIVE_81
66.5
B_CELL_NAIVE_82
64.0
B_CELL_NAIVE_83
61.2
B_CELL_NAIVE_84
58.8
B_CELL_NAIVE_85
58.8
B_CELL_NAIVE_86
58.3
B_CELL_NAIVE_87
57.8
B_CELL_NAIVE_88
56.4
B_CELL_NAIVE_89
54.0
B_CELL_NAIVE_90
47.6
B_CELL_NAIVE_91
46.1
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