A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.1
nTPM
Monaco:
29.2
nTPM
Schmiedel:
203.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.1
HPA sample
nTPM
Classical monocyte nTPM: 1.0
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.6
P10809_1003
0.7
P10809_1020
0.6
P10809_1039
1.3
P10809_1058
1.7
P10809_1080
0.8
P10809_1107
1.0
Intermediate monocyte nTPM: 4.2
Samples: 6
Max nTPM: 6.0
Min nTPM: 3.3
P10809_1004
5.0
P10809_1023
3.4
P10809_1042
3.5
P10809_1061
6.0
P10809_1081
3.3
P10809_1108
3.8
Non-classical monocyte nTPM: 7.1
Samples: 5
Max nTPM: 15.5
Min nTPM: 4.6
P10809_1005
4.7
P10809_1053
4.6
P10809_1072
15.5
P10809_1082
4.6
P10809_1109
6.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.2
Monaco sample
nTPM
Classical monocyte nTPM: 6.4
Samples: 4
Max nTPM: 7.6
Min nTPM: 5.3
RHH5313_R3680
6.9
RHH5221_R3593
5.3
RHH5250_R3622
5.9
RHH5279_R3651
7.6
Intermediate monocyte nTPM: 29.2
Samples: 4
Max nTPM: 44.1
Min nTPM: 19.5
RHH5314_R3681
19.5
RHH5222_R3594
25.6
RHH5251_R3623
44.1
RHH5280_R3652
27.6
Non-classical monocyte nTPM: 23.4
Samples: 4
Max nTPM: 31.7
Min nTPM: 17.3
RHH5315_R3682
24.7
RHH5223_R3595
17.3
RHH5252_R3624
31.7
RHH5281_R3653
19.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
203.6
Schmiedel sample id
TPM
Classical monocyte TPM: 59.0
Samples: 91
Max TPM: 118.5
Min TPM: 16.2
MONOCYTES_1
118.5
MONOCYTES_2
115.0
MONOCYTES_3
110.5
MONOCYTES_4
110.0
MONOCYTES_5
109.0
MONOCYTES_6
106.9
MONOCYTES_7
100.2
MONOCYTES_8
98.4
MONOCYTES_9
96.3
MONOCYTES_10
96.0
MONOCYTES_11
94.3
MONOCYTES_12
93.2
MONOCYTES_13
92.8
MONOCYTES_14
90.2
MONOCYTES_15
89.8
MONOCYTES_16
88.3
MONOCYTES_17
79.9
MONOCYTES_18
78.8
MONOCYTES_19
71.9
MONOCYTES_20
71.2
MONOCYTES_21
70.5
MONOCYTES_22
70.3
MONOCYTES_23
68.0
MONOCYTES_24
67.4
MONOCYTES_25
66.8
MONOCYTES_26
66.8
MONOCYTES_27
66.3
MONOCYTES_28
66.3
MONOCYTES_29
66.0
MONOCYTES_30
64.0
MONOCYTES_31
64.0
MONOCYTES_32
62.2
MONOCYTES_33
61.2
MONOCYTES_34
61.0
MONOCYTES_35
60.3
MONOCYTES_36
60.2
MONOCYTES_37
59.9
MONOCYTES_38
59.0
MONOCYTES_39
58.9
MONOCYTES_40
58.3
MONOCYTES_41
57.7
MONOCYTES_42
57.2
MONOCYTES_43
57.1
MONOCYTES_44
55.8
MONOCYTES_45
55.7
MONOCYTES_46
55.4
MONOCYTES_47
55.4
MONOCYTES_48
54.4
MONOCYTES_49
54.2
MONOCYTES_50
54.1
MONOCYTES_51
54.0
MONOCYTES_52
53.7
MONOCYTES_53
53.7
MONOCYTES_54
53.1
MONOCYTES_55
51.9
MONOCYTES_56
51.9
MONOCYTES_57
51.7
MONOCYTES_58
50.6
MONOCYTES_59
49.8
MONOCYTES_60
49.1
MONOCYTES_61
48.5
MONOCYTES_62
46.3
MONOCYTES_63
45.9
MONOCYTES_64
44.4
MONOCYTES_65
43.3
MONOCYTES_66
43.1
MONOCYTES_67
42.2
MONOCYTES_68
41.7
MONOCYTES_69
41.7
MONOCYTES_70
41.1
MONOCYTES_71
40.7
MONOCYTES_72
40.2
MONOCYTES_73
39.5
MONOCYTES_74
38.6
MONOCYTES_75
38.0
MONOCYTES_76
36.6
MONOCYTES_77
36.4
MONOCYTES_78
36.4
MONOCYTES_79
36.4
MONOCYTES_80
36.4
MONOCYTES_81
33.4
MONOCYTES_82
33.0
MONOCYTES_83
31.7
MONOCYTES_84
29.8
MONOCYTES_85
29.4
MONOCYTES_86
25.7
MONOCYTES_87
24.9
MONOCYTES_88
24.3
MONOCYTES_89
22.0
MONOCYTES_90
20.1
MONOCYTES_91
16.2
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Non-classical monocyte TPM: 203.6
Samples: 90
Max TPM: 301.0
Min TPM: 134.9
M2_1
301.0
M2_2
276.9
M2_3
273.4
M2_4
268.7
M2_5
255.3
M2_6
253.4
M2_7
253.3
M2_8
251.9
M2_9
248.8
M2_10
245.4
M2_11
244.7
M2_12
240.0
M2_13
238.2
M2_14
236.2
M2_15
234.6
M2_16
233.7
M2_17
233.3
M2_18
232.5
M2_19
229.3
M2_20
227.6
M2_21
225.2
M2_22
224.8
M2_23
224.5
M2_24
223.6
M2_25
221.2
M2_26
221.0
M2_27
219.9
M2_28
219.4
M2_29
219.2
M2_30
217.6
M2_31
216.9
M2_32
215.7
M2_33
215.5
M2_34
214.1
M2_35
213.9
M2_36
213.8
M2_37
213.5
M2_38
212.0
M2_39
210.5
M2_40
209.1
M2_41
208.7
M2_42
207.5
M2_43
205.0
M2_44
204.4
M2_45
203.9
M2_46
202.5
M2_47
201.7
M2_48
199.8
M2_49
198.9
M2_50
198.8
M2_51
198.8
M2_52
198.3
M2_53
195.5
M2_54
195.3
M2_55
195.3
M2_56
195.2
M2_57
194.2
M2_58
193.5
M2_59
192.6
M2_60
192.2
M2_61
191.8
M2_62
191.2
M2_63
187.3
M2_64
187.3
M2_65
187.2
M2_66
186.8
M2_67
182.7
M2_68
181.5
M2_69
179.6
M2_70
178.2
M2_71
178.2
M2_72
173.3
M2_73
170.8
M2_74
170.2
M2_75
170.0
M2_76
169.5
M2_77
164.0
M2_78
162.8
M2_79
160.4
M2_80
159.4
M2_81
157.8
M2_82
154.6
M2_83
154.2
M2_84
153.5
M2_85
148.4
M2_86
147.2
M2_87
146.2
M2_88
140.1
M2_89
139.2
M2_90
134.9
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