A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.3
nTPM
Monaco:
99.6
nTPM
Schmiedel:
995.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.3
HPA sample
nTPM
NK-cell nTPM: 25.3
Samples: 6
Max nTPM: 41.4
Min nTPM: 19.7
P10809_1013
19.8
P10809_1033
21.0
P10809_1052
23.0
P10809_1071
19.7
P10809_1093
41.4
P10809_1103
27.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
99.6
Monaco sample
nTPM
NK-cell nTPM: 99.6
Samples: 4
Max nTPM: 124.8
Min nTPM: 89.2
RHH5316_R3683
93.0
RHH5224_R3596
124.8
RHH5253_R3625
91.3
RHH5282_R3654
89.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
995.1
Schmiedel sample id
TPM
NK-cell TPM: 995.1
Samples: 90
Max TPM: 1338.9
Min TPM: 677.1
NK_1
1338.9
NK_2
1334.2
NK_3
1330.1
NK_4
1329.1
NK_5
1323.1
NK_6
1312.9
NK_7
1302.3
NK_8
1291.8
NK_9
1290.8
NK_10
1209.4
NK_11
1201.8
NK_12
1193.4
NK_13
1191.9
NK_14
1185.2
NK_15
1180.7
NK_16
1174.8
NK_17
1174.4
NK_18
1171.5
NK_19
1171.5
NK_20
1164.2
NK_21
1163.2
NK_22
1161.9
NK_23
1147.8
NK_24
1144.3
NK_25
1136.1
NK_26
1133.5
NK_27
1130.0
NK_28
1123.9
NK_29
1114.2
NK_30
1103.1
NK_31
1048.2
NK_32
1046.3
NK_33
1043.6
NK_34
1039.1
NK_35
1018.5
NK_36
1017.8
NK_37
1014.0
NK_38
1008.7
NK_39
1006.8
NK_40
1003.6
NK_41
1003.4
NK_42
992.3
NK_43
978.2
NK_44
972.1
NK_45
960.8
NK_46
958.5
NK_47
951.8
NK_48
951.8
NK_49
948.0
NK_50
945.9
NK_51
936.7
NK_52
934.5
NK_53
924.7
NK_54
924.0
NK_55
909.5
NK_56
908.5
NK_57
897.0
NK_58
895.3
NK_59
891.6
NK_60
889.4
NK_61
881.1
NK_62
879.5
NK_63
879.2
NK_64
875.5
NK_65
870.1
NK_66
866.4
NK_67
862.3
NK_68
858.8
NK_69
848.6
NK_70
843.8
NK_71
843.0
NK_72
840.7
NK_73
834.5
NK_74
830.8
NK_75
828.3
NK_76
823.1
NK_77
814.7
NK_78
805.6
NK_79
802.7
NK_80
797.3
NK_81
793.7
NK_82
789.8
NK_83
787.1
NK_84
771.9
NK_85
759.7
NK_86
724.7
NK_87
722.4
NK_88
704.7
NK_89
687.2
NK_90
677.1
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