MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:114.2 nTPM
HPA Brain:95.7 nTPM
GTEx:114.2 nTPM
FANTOM5:121.5 Scaled Tags Per Million
Pig:55.4 nTPM
Mouse:55.1 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 95.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.0
2019 Male, age 18, unknown 101.8
1870 Female, age 42, unknown 92.8
2411 Female, age 72, unknown 87.1
2828 Female, age 72, unknown 85.3
2666 Male, age 74, left hemisphere 83.3
1830 Male, age 51, unknown 81.8
1827 Male, age 72, unknown 79.5
1833 Male, age 53, unknown 78.8
2586 Male, age 75, left hemisphere 76.9
2219 Male, age 76, both hemispheres 63.1
Dorsal raphe nucleus
nTPM: 82.5
2750 Male, age 76, both hemispheres 89.8
2298 Female, age 72, unknown 83.2
1828 Male, age 53, unknown 83.1
2016 Female, age 72, unknown 79.5
2047 Male, age 72, unknown 76.8
Inferior colliculus
nTPM: 71.8
2097 Female, age 72, unknown 77.0
1890 Male, age 53, unknown 74.1
1848 Female, age 42, unknown 71.3
2849 Male, age 72, unknown 65.0
Median raphe nucleus
nTPM: 73.9
2220 Male, age 76, midline 73.9
Periaquaductal grey, anterior
nTPM: 76.3
2502 Female, age 75, unknown 83.7
1947 Male, age 18, unknown 76.8
1795 Male, age 51, unknown 68.5
Periaquaductal grey, dorsal
nTPM: 68.9
2850 Male, age 76, both hemispheres 70.6
2464 Female, age 72, unknown 70.3
1840 Male, age 53, unknown 67.8
1831 Male, age 72, unknown 67.1
Periaquaductal grey, lateral
nTPM: 72.7
2053 Male, age 18, unknown 75.1
2140 Male, age 76, both hemispheres 72.7
2272 Male, age 74, both hemispheres 70.4
Pretectal area
nTPM: 79.8
2007 Male, age 72, unknown 94.4
1817 Female, age 42, unknown 93.1
1815 Male, age 53, unknown 83.6
2273 Male, age 74, both hemispheres 82.3
2667 Female, age 75, unknown 81.2
1816 Male, age 51, unknown 79.5
2316 Male, age 76, right hemisphere 78.2
1944 Female, age 72, unknown 76.9
2224 Female, age 72, unknown 70.0
2407 Male, age 75, both hemispheres 69.6
2825 Male, age 18, unknown 69.5
Red nucleus
nTPM: 95.7
1821 Female, age 72, unknown 116.3
1865 Male, age 51, unknown 106.2
1904 Male, age 53, unknown 104.4
2785 Male, age 18, unknown 98.1
2823 Male, age 76, right hemisphere 97.2
2769 Male, age 72, unknown 96.6
2227 Male, age 72, unknown 96.0
1954 Female, age 42, unknown 95.7
2503 Female, age 72, unknown 95.7
2725 Female, age 75, unknown 84.8
2588 Male, age 74, left hemisphere 83.1
2584 Male, age 75, left hemisphere 74.0
Substantia nigra
nTPM: 85.6
1916 Female, age 42, unknown 98.1
1851 Male, age 51, unknown 96.8
1889 Female, age 72, unknown 91.9
1941 Male, age 53, unknown 86.2
2665 Male, age 74, both hemispheres 84.6
2699 Male, age 18, unknown 83.4
2590 Female, age 75, unknown 82.3
2583 Male, age 75, right hemisphere 79.0
2241 Male, age 72, unknown 77.9
2409 Female, age 72, unknown 75.7
Superior colliculus
nTPM: 78.5
2587 Male, age 74, left hemisphere 92.1
1995 Male, age 72, unknown 88.4
1913 Female, age 42, unknown 86.9
2668 Female, age 75, unknown 80.8
2087 Female, age 72, unknown 75.3
1796 Male, age 53, unknown 75.2
1839 Male, age 51, unknown 74.1
1895 Male, age 76, right hemisphere 73.0
2664 Male, age 75, both hemispheres 70.8
2261 Male, age 18, unknown 68.7
Ventral tegmental area
nTPM: 83.1
2410 Female, age 72, unknown 91.4
2223 Female, age 72, unknown 91.3
1915 Female, age 42, unknown 85.6
2218 Male, age 76, both hemispheres 78.3
1942 Male, age 51, unknown 77.0
2021 Male, age 53, unknown 75.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 114.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 114.2
Samples: 183

Max nTPM: 221.7
Min nTPM: 73.4
Std nTPM: 21.1
Median nTPM: 109.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 221.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 181.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 174.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 173.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 164.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 160.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 155.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 151.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 150.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 149.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 149.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 121.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 121.5
FF:10158-103A5 76 years, female 121.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 55.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.0
Samples: 4

Max nTPM: 66.2
Min nTPM: 40.4
Sample A Female 66.2
Sample B Female 40.4
Sample C Male 53.2
Sample D Male 48.3
Midbrain
nTPM: 54.5
Samples: 4

Max nTPM: 64.3
Min nTPM: 45.3
Sample A Female 64.3
Sample B Female 56.7
Sample C Male 45.3
Sample D Male 51.6
Periaqueductal gray
nTPM: 50.7
Samples: 3

Max nTPM: 56.3
Min nTPM: 44.7
Sample B Female 51.2
Sample C Male 56.3
Sample D Male 44.7
Superior colliculi
nTPM: 55.4
Samples: 4

Max nTPM: 70.8
Min nTPM: 39.1
Sample A Female 70.8
Sample B Female 39.1
Sample C Male 54.5
Sample D Male 57.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 55.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 57.4
Min nTPM: 52.8
Sample A Male 57.4
Sample B Male 53.2
Sample C Female 52.8
Sample D Female 57.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
70429112 Antisense, RP_050614_01_A05, Mouse strain C57BL/6J (56 days, male) 1.9

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