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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:138.7 nTPM
HPA Brain:101.1 nTPM
GTEx:138.7 nTPM
FANTOM5:105.7 Scaled Tags Per Million
Pig:52.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 95.1
1981 Female, age 72, midline 119.3
2816 Male, age 47, midline 96.5
2048 Male, age 55, midline 94.0
2194 Female, age 79, both hemispheres 83.9
2565 Male, age 75, midline 81.6
Cervical spinal cord, dorsal horn
nTPM: 97.7
2173 Female, age 72, unknown 135.7
2296 Male, age 66, both hemispheres 130.2
2069 Male, age 47, both hemispheres 93.3
1877 Male, age 55, unknown 86.5
2721 Male, age 90, both hemispheres 70.7
2297 Male, age 75, both hemispheres 70.0
Cervical spinal cord, ventral horn
nTPM: 101.1
2098 Female, age 72, unknown 132.4
2809 Male, age 90, both hemispheres 108.5
2480 Male, age 75, both hemispheres 105.3
2068 Male, age 55, unknown 92.7
2295 Male, age 66, both hemispheres 89.9
2820 Female, age 79, both hemispheres 78.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 138.7
Samples: 204

Max nTPM: 198.8
Min nTPM: 70.2
Std nTPM: 25.3
Median nTPM: 140.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 198.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 197.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 194.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 193.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 192.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 189.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 187.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 185.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 182.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 181.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 179.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 178.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 177.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 175.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 175.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 174.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 174.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 174.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 173.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 172.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 171.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 171.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 170.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 166.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 165.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 164.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 163.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 163.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 163.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 162.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 162.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 162.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 162.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 161.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 161.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 161.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 159.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 159.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 158.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 158.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 157.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 157.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 157.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 156.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 156.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 156.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 156.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 156.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 155.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 155.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 155.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 154.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 154.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 153.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 153.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 152.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 152.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 152.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 151.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 151.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 151.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 150.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 150.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 150.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 150.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 150.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 149.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 149.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 149.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 149.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 149.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 148.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 148.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 148.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 147.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 147.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 147.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 147.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 146.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 146.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 146.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 146.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 145.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 145.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 145.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 145.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 145.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 144.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 144.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 144.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 144.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 144.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 143.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 143.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 143.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 143.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 143.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 142.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 142.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 141.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 141.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 141.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 140.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 140.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 139.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 139.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 139.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 139.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 139.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 139.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 139.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 139.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 139.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 138.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 137.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 137.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 137.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 136.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 136.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 136.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 135.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 135.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 135.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 134.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 133.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 133.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 133.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 132.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 131.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 131.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 131.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 131.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 131.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 130.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 130.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 130.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 129.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 129.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 128.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 128.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 127.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 127.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 127.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 127.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 127.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 126.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 126.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 124.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 124.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 124.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 123.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 122.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 122.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 120.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 120.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 120.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 119.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 118.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 118.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 118.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 117.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 117.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 116.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 116.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 116.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 115.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 115.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 114.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 113.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 113.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 113.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 112.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 111.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 110.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 109.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 109.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 107.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 107.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 106.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 106.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 105.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 105.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 103.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 103.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 102.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 100.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 100.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 100.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 99.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 99.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 98.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 97.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 96.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 95.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 92.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 90.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 88.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 87.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 86.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 85.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 85.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 82.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 82.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 70.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

105.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 105.7
FF:10181-103D1 60 years, female 110.9
FF:10159-103A6 76 years, female 100.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 50.5
Samples: 4

Max nTPM: 57.3
Min nTPM: 46.0
Sample A Female 57.3
Sample B Female 46.2
Sample C Male 46.0
Sample D Male 52.6
Ventral spinal cord
nTPM: 52.5
Samples: 4

Max nTPM: 55.0
Min nTPM: 48.4
Sample A Female 51.7
Sample B Female 54.8
Sample C Male 55.0
Sample D Male 48.4

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