A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
134.7
nTPM
Monaco:
216.4
nTPM
Schmiedel:
34.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
134.7
HPA sample
nTPM
Memory B-cell nTPM: 116.2
Samples: 6
Max nTPM: 146.5
Min nTPM: 90.9
P10809_1017
90.9
P10809_1025
146.5
P10809_1044
111.1
P10809_1063
110.5
P10809_1092
114.9
P10809_1105
123.1
Naive B-cell nTPM: 134.7
Samples: 6
Max nTPM: 270.8
Min nTPM: 76.2
P10809_1011
76.2
P10809_1029
127.9
P10809_1048
270.8
P10809_1067
88.6
P10809_1091
121.3
P10809_1104
123.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
216.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 139.5
Samples: 4
Max nTPM: 160.0
Min nTPM: 101.1
RHH5310_R3677
160.0
RHH5218_R3590
153.3
RHH5247_R3619
143.4
RHH5276_R3648
101.1
Naive B-cell nTPM: 136.2
Samples: 4
Max nTPM: 220.3
Min nTPM: 68.1
RHH5308_R3675
134.3
RHH5216_R3588
220.3
RHH5245_R3617
68.1
RHH5274_R3646
122.2
Non-switched memory B-cell nTPM: 164.7
Samples: 4
Max nTPM: 209.3
Min nTPM: 108.0
RHH5309_R3676
164.1
RHH5217_R3589
177.5
RHH5246_R3618
209.3
RHH5275_R3647
108.0
Plasmablast nTPM: 216.4
Samples: 4
Max nTPM: 245.7
Min nTPM: 173.2
RHH5312_R3679
233.9
RHH5220_R3592
245.7
RHH5249_R3621
212.9
RHH5278_R3650
173.2
Switched memory B-cell nTPM: 158.3
Samples: 4
Max nTPM: 168.1
Min nTPM: 141.1
RHH5311_R3678
168.1
RHH5219_R3591
165.2
RHH5248_R3620
158.6
RHH5277_R3649
141.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.9
Schmiedel sample id
TPM
Naive B-cell TPM: 34.9
Samples: 91
Max TPM: 45.0
Min TPM: 24.5
B_CELL_NAIVE_1
45.0
B_CELL_NAIVE_2
43.0
B_CELL_NAIVE_3
40.2
B_CELL_NAIVE_4
40.2
B_CELL_NAIVE_5
40.1
B_CELL_NAIVE_6
39.9
B_CELL_NAIVE_7
39.8
B_CELL_NAIVE_8
39.5
B_CELL_NAIVE_9
39.4
B_CELL_NAIVE_10
39.4
B_CELL_NAIVE_11
39.4
B_CELL_NAIVE_12
39.4
B_CELL_NAIVE_13
39.3
B_CELL_NAIVE_14
39.2
B_CELL_NAIVE_15
39.1
B_CELL_NAIVE_16
39.1
B_CELL_NAIVE_17
38.9
B_CELL_NAIVE_18
38.9
B_CELL_NAIVE_19
38.3
B_CELL_NAIVE_20
38.2
B_CELL_NAIVE_21
37.9
B_CELL_NAIVE_22
37.9
B_CELL_NAIVE_23
37.8
B_CELL_NAIVE_24
37.4
B_CELL_NAIVE_25
37.3
B_CELL_NAIVE_26
37.0
B_CELL_NAIVE_27
36.5
B_CELL_NAIVE_28
36.5
B_CELL_NAIVE_29
36.5
B_CELL_NAIVE_30
36.3
B_CELL_NAIVE_31
36.3
B_CELL_NAIVE_32
36.3
B_CELL_NAIVE_33
36.3
B_CELL_NAIVE_34
36.3
B_CELL_NAIVE_35
36.2
B_CELL_NAIVE_36
35.5
B_CELL_NAIVE_37
35.5
B_CELL_NAIVE_38
35.5
B_CELL_NAIVE_39
35.5
B_CELL_NAIVE_40
35.4
B_CELL_NAIVE_41
35.2
B_CELL_NAIVE_42
35.1
B_CELL_NAIVE_43
35.1
B_CELL_NAIVE_44
34.8
B_CELL_NAIVE_45
34.7
B_CELL_NAIVE_46
34.6
B_CELL_NAIVE_47
34.5
B_CELL_NAIVE_48
34.2
B_CELL_NAIVE_49
34.2
B_CELL_NAIVE_50
34.1
B_CELL_NAIVE_51
34.0
B_CELL_NAIVE_52
34.0
B_CELL_NAIVE_53
33.8
B_CELL_NAIVE_54
33.8
B_CELL_NAIVE_55
33.8
B_CELL_NAIVE_56
33.6
B_CELL_NAIVE_57
33.6
B_CELL_NAIVE_58
33.6
B_CELL_NAIVE_59
33.6
B_CELL_NAIVE_60
33.5
B_CELL_NAIVE_61
33.5
B_CELL_NAIVE_62
33.5
B_CELL_NAIVE_63
33.5
B_CELL_NAIVE_64
33.2
B_CELL_NAIVE_65
32.8
B_CELL_NAIVE_66
32.8
B_CELL_NAIVE_67
32.3
B_CELL_NAIVE_68
31.9
B_CELL_NAIVE_69
31.9
B_CELL_NAIVE_70
31.9
B_CELL_NAIVE_71
31.8
B_CELL_NAIVE_72
31.8
B_CELL_NAIVE_73
31.8
B_CELL_NAIVE_74
31.7
B_CELL_NAIVE_75
31.7
B_CELL_NAIVE_76
31.6
B_CELL_NAIVE_77
31.6
B_CELL_NAIVE_78
31.4
B_CELL_NAIVE_79
31.4
B_CELL_NAIVE_80
31.0
B_CELL_NAIVE_81
30.7
B_CELL_NAIVE_82
30.7
B_CELL_NAIVE_83
30.4
B_CELL_NAIVE_84
30.3
B_CELL_NAIVE_85
30.1
B_CELL_NAIVE_86
30.0
B_CELL_NAIVE_87
29.8
B_CELL_NAIVE_88
29.0
B_CELL_NAIVE_89
27.0
B_CELL_NAIVE_90
26.4
B_CELL_NAIVE_91
24.5
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The Human Protein Atlas project is funded
