A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
205.8
nTPM
Monaco:
301.1
nTPM
Schmiedel:
76.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
205.8
HPA sample
nTPM
Classical monocyte nTPM: 205.8
Samples: 6
Max nTPM: 243.8
Min nTPM: 159.3
P10809_1003
239.7
P10809_1020
240.2
P10809_1039
243.8
P10809_1058
159.3
P10809_1080
163.2
P10809_1107
188.4
Intermediate monocyte nTPM: 193.0
Samples: 6
Max nTPM: 223.2
Min nTPM: 149.4
P10809_1004
173.6
P10809_1023
221.5
P10809_1042
223.2
P10809_1061
199.5
P10809_1081
149.4
P10809_1108
190.6
Non-classical monocyte nTPM: 201.7
Samples: 5
Max nTPM: 325.3
Min nTPM: 122.8
P10809_1005
165.0
P10809_1053
210.7
P10809_1072
325.3
P10809_1082
122.8
P10809_1109
184.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
301.1
Monaco sample
nTPM
Classical monocyte nTPM: 301.1
Samples: 4
Max nTPM: 325.6
Min nTPM: 272.7
RHH5313_R3680
320.3
RHH5221_R3593
325.6
RHH5250_R3622
285.7
RHH5279_R3651
272.7
Intermediate monocyte nTPM: 209.2
Samples: 4
Max nTPM: 244.1
Min nTPM: 184.4
RHH5314_R3681
213.3
RHH5222_R3594
184.4
RHH5251_R3623
194.9
RHH5280_R3652
244.1
Non-classical monocyte nTPM: 199.7
Samples: 4
Max nTPM: 226.0
Min nTPM: 155.3
RHH5315_R3682
202.8
RHH5223_R3595
155.3
RHH5252_R3624
214.7
RHH5281_R3653
226.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.1
Schmiedel sample id
TPM
Classical monocyte TPM: 76.2
Samples: 91
Max TPM: 89.3
Min TPM: 61.5
MONOCYTES_1
89.3
MONOCYTES_2
85.9
MONOCYTES_3
85.4
MONOCYTES_4
85.0
MONOCYTES_5
84.7
MONOCYTES_6
84.5
MONOCYTES_7
84.2
MONOCYTES_8
84.1
MONOCYTES_9
83.8
MONOCYTES_10
83.2
MONOCYTES_11
82.8
MONOCYTES_12
82.4
MONOCYTES_13
82.4
MONOCYTES_14
82.1
MONOCYTES_15
82.1
MONOCYTES_16
81.9
MONOCYTES_17
81.8
MONOCYTES_18
81.4
MONOCYTES_19
81.3
MONOCYTES_20
81.3
MONOCYTES_21
81.0
MONOCYTES_22
80.9
MONOCYTES_23
80.9
MONOCYTES_24
80.8
MONOCYTES_25
80.4
MONOCYTES_26
80.3
MONOCYTES_27
80.3
MONOCYTES_28
80.2
MONOCYTES_29
78.9
MONOCYTES_30
78.9
MONOCYTES_31
78.7
MONOCYTES_32
78.5
MONOCYTES_33
78.3
MONOCYTES_34
78.3
MONOCYTES_35
78.1
MONOCYTES_36
77.8
MONOCYTES_37
77.8
MONOCYTES_38
77.7
MONOCYTES_39
77.5
MONOCYTES_40
76.9
MONOCYTES_41
76.8
MONOCYTES_42
76.8
MONOCYTES_43
76.7
MONOCYTES_44
76.6
MONOCYTES_45
76.4
MONOCYTES_46
76.3
MONOCYTES_47
76.2
MONOCYTES_48
75.1
MONOCYTES_49
75.1
MONOCYTES_50
75.1
MONOCYTES_51
74.7
MONOCYTES_52
74.6
MONOCYTES_53
74.5
MONOCYTES_54
74.5
MONOCYTES_55
74.5
MONOCYTES_56
74.4
MONOCYTES_57
74.4
MONOCYTES_58
74.1
MONOCYTES_59
73.8
MONOCYTES_60
73.8
MONOCYTES_61
73.5
MONOCYTES_62
73.4
MONOCYTES_63
73.1
MONOCYTES_64
73.1
MONOCYTES_65
73.0
MONOCYTES_66
72.8
MONOCYTES_67
72.6
MONOCYTES_68
72.4
MONOCYTES_69
72.4
MONOCYTES_70
72.0
MONOCYTES_71
71.8
MONOCYTES_72
71.7
MONOCYTES_73
71.5
MONOCYTES_74
71.3
MONOCYTES_75
71.2
MONOCYTES_76
71.1
MONOCYTES_77
70.6
MONOCYTES_78
70.5
MONOCYTES_79
70.4
MONOCYTES_80
70.4
MONOCYTES_81
69.3
MONOCYTES_82
69.1
MONOCYTES_83
68.4
MONOCYTES_84
68.1
MONOCYTES_85
67.7
MONOCYTES_86
67.1
MONOCYTES_87
67.0
MONOCYTES_88
66.1
MONOCYTES_89
65.4
MONOCYTES_90
65.1
MONOCYTES_91
61.5
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Non-classical monocyte TPM: 64.2
Samples: 90
Max TPM: 78.2
Min TPM: 49.1
M2_1
78.2
M2_2
73.9
M2_3
73.8
M2_4
73.6
M2_5
73.3
M2_6
71.6
M2_7
71.6
M2_8
71.5
M2_9
71.4
M2_10
70.7
M2_11
70.6
M2_12
70.3
M2_13
70.1
M2_14
70.0
M2_15
69.7
M2_16
69.5
M2_17
69.4
M2_18
68.9
M2_19
68.8
M2_20
68.7
M2_21
68.6
M2_22
68.4
M2_23
68.4
M2_24
68.1
M2_25
68.0
M2_26
67.9
M2_27
67.9
M2_28
67.8
M2_29
67.7
M2_30
67.6
M2_31
67.5
M2_32
67.4
M2_33
67.3
M2_34
66.7
M2_35
66.5
M2_36
66.3
M2_37
66.1
M2_38
65.7
M2_39
65.5
M2_40
65.4
M2_41
65.3
M2_42
65.2
M2_43
65.1
M2_44
65.1
M2_45
64.8
M2_46
64.8
M2_47
64.7
M2_48
64.5
M2_49
64.4
M2_50
64.3
M2_51
64.2
M2_52
63.0
M2_53
62.7
M2_54
62.7
M2_55
62.5
M2_56
62.5
M2_57
62.5
M2_58
62.5
M2_59
62.4
M2_60
62.1
M2_61
62.1
M2_62
62.0
M2_63
61.9
M2_64
61.3
M2_65
61.1
M2_66
60.8
M2_67
60.6
M2_68
60.2
M2_69
60.1
M2_70
59.9
M2_71
59.9
M2_72
59.7
M2_73
59.5
M2_74
59.1
M2_75
59.0
M2_76
59.0
M2_77
58.9
M2_78
58.5
M2_79
58.2
M2_80
58.2
M2_81
57.1
M2_82
56.0
M2_83
55.9
M2_84
55.5
M2_85
54.0
M2_86
53.8
M2_87
50.7
M2_88
50.3
M2_89
50.0
M2_90
49.1
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