A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
198.1
nTPM
Monaco:
174.8
nTPM
Schmiedel:
62.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
198.1
HPA sample
nTPM
NK-cell nTPM: 198.1
Samples: 6
Max nTPM: 237.7
Min nTPM: 134.1
P10809_1013
134.1
P10809_1033
193.6
P10809_1052
184.5
P10809_1071
230.6
P10809_1093
237.7
P10809_1103
208.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
174.8
Monaco sample
nTPM
NK-cell nTPM: 174.8
Samples: 4
Max nTPM: 235.7
Min nTPM: 112.5
RHH5316_R3683
172.9
RHH5224_R3596
235.7
RHH5253_R3625
112.5
RHH5282_R3654
178.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.5
Schmiedel sample id
TPM
NK-cell TPM: 62.5
Samples: 90
Max TPM: 89.2
Min TPM: 45.4
NK_1
89.2
NK_2
79.7
NK_3
76.5
NK_4
76.3
NK_5
76.2
NK_6
76.2
NK_7
75.7
NK_8
73.7
NK_9
73.2
NK_10
71.9
NK_11
70.8
NK_12
70.7
NK_13
70.1
NK_14
70.0
NK_15
70.0
NK_16
69.9
NK_17
69.1
NK_18
68.7
NK_19
68.6
NK_20
68.5
NK_21
68.3
NK_22
67.9
NK_23
67.9
NK_24
67.8
NK_25
67.8
NK_26
67.8
NK_27
66.9
NK_28
66.9
NK_29
66.2
NK_30
66.1
NK_31
66.1
NK_32
66.1
NK_33
65.8
NK_34
65.5
NK_35
64.4
NK_36
64.3
NK_37
63.7
NK_38
63.5
NK_39
63.4
NK_40
63.2
NK_41
63.2
NK_42
63.1
NK_43
62.7
NK_44
62.6
NK_45
62.5
NK_46
62.3
NK_47
62.2
NK_48
61.6
NK_49
61.6
NK_50
61.5
NK_51
61.4
NK_52
60.7
NK_53
60.1
NK_54
60.0
NK_55
59.7
NK_56
59.5
NK_57
59.2
NK_58
59.0
NK_59
58.5
NK_60
58.5
NK_61
58.0
NK_62
57.9
NK_63
57.9
NK_64
57.5
NK_65
57.3
NK_66
56.6
NK_67
56.3
NK_68
56.0
NK_69
55.7
NK_70
55.7
NK_71
55.6
NK_72
55.4
NK_73
55.2
NK_74
55.2
NK_75
55.0
NK_76
54.6
NK_77
54.5
NK_78
54.4
NK_79
54.3
NK_80
53.5
NK_81
53.3
NK_82
53.0
NK_83
52.6
NK_84
52.6
NK_85
52.4
NK_86
52.0
NK_87
49.5
NK_88
48.7
NK_89
45.6
NK_90
45.4
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