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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • STRAP
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:76.4 nTPM
Monaco:331.8 nTPM
Schmiedel:199.8 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

76.4
HPA sample nTPM
Memory B-cell
nTPM: 76.4
Samples: 6

Max nTPM: 114.0
Min nTPM: 58.6
P10809_1017 58.6
P10809_1025 78.3
P10809_1044 114.0
P10809_1063 63.7
P10809_1092 70.5
P10809_1105 73.2
Naive B-cell
nTPM: 67.0
Samples: 6

Max nTPM: 137.1
Min nTPM: 29.1
P10809_1011 29.1
P10809_1029 49.2
P10809_1048 137.1
P10809_1067 58.7
P10809_1091 67.9
P10809_1104 59.9

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

331.8
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 185.3
Samples: 4

Max nTPM: 192.7
Min nTPM: 179.7
RHH5310_R3677 192.7
RHH5218_R3590 184.3
RHH5247_R3619 184.5
RHH5276_R3648 179.7
Naive B-cell
nTPM: 149.1
Samples: 4

Max nTPM: 202.3
Min nTPM: 83.6
RHH5308_R3675 151.9
RHH5216_R3588 202.3
RHH5245_R3617 83.6
RHH5274_R3646 158.6
Non-switched memory B-cell
nTPM: 179.8
Samples: 4

Max nTPM: 208.0
Min nTPM: 165.5
RHH5309_R3676 170.8
RHH5217_R3589 208.0
RHH5246_R3618 174.9
RHH5275_R3647 165.5
Plasmablast
nTPM: 331.8
Samples: 4

Max nTPM: 340.6
Min nTPM: 321.2
RHH5312_R3679 321.2
RHH5220_R3592 329.3
RHH5249_R3621 340.6
RHH5278_R3650 336.1
Switched memory B-cell
nTPM: 191.2
Samples: 4

Max nTPM: 223.9
Min nTPM: 166.6
RHH5311_R3678 166.6
RHH5219_R3591 192.1
RHH5248_R3620 223.9
RHH5277_R3649 182.2

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

199.8
Schmiedel sample id TPM
Naive B-cell
TPM: 199.8
Samples: 91

Max TPM: 357.7
Min TPM: 117.5
B_CELL_NAIVE_1 357.7
B_CELL_NAIVE_2 327.3
B_CELL_NAIVE_3 303.5
B_CELL_NAIVE_4 284.9
B_CELL_NAIVE_5 272.6
B_CELL_NAIVE_6 265.0
B_CELL_NAIVE_7 256.5
B_CELL_NAIVE_8 248.9
B_CELL_NAIVE_9 248.6
B_CELL_NAIVE_10 243.7
B_CELL_NAIVE_11 241.0
B_CELL_NAIVE_12 240.5
B_CELL_NAIVE_13 239.6
B_CELL_NAIVE_14 236.3
B_CELL_NAIVE_15 235.4
B_CELL_NAIVE_16 232.8
B_CELL_NAIVE_17 232.6
B_CELL_NAIVE_18 231.7
B_CELL_NAIVE_19 229.2
B_CELL_NAIVE_20 221.9
B_CELL_NAIVE_21 221.7
B_CELL_NAIVE_22 220.7
B_CELL_NAIVE_23 220.2
B_CELL_NAIVE_24 217.5
B_CELL_NAIVE_25 215.2
B_CELL_NAIVE_26 214.0
B_CELL_NAIVE_27 213.0
B_CELL_NAIVE_28 212.5
B_CELL_NAIVE_29 210.0
B_CELL_NAIVE_30 207.8
B_CELL_NAIVE_31 207.4
B_CELL_NAIVE_32 207.3
B_CELL_NAIVE_33 207.2
B_CELL_NAIVE_34 206.2
B_CELL_NAIVE_35 206.1
B_CELL_NAIVE_36 205.1
B_CELL_NAIVE_37 200.8
B_CELL_NAIVE_38 200.5
B_CELL_NAIVE_39 200.1
B_CELL_NAIVE_40 199.9
B_CELL_NAIVE_41 199.3
B_CELL_NAIVE_42 199.0
B_CELL_NAIVE_43 198.7
B_CELL_NAIVE_44 197.5
B_CELL_NAIVE_45 197.3
B_CELL_NAIVE_46 196.0
B_CELL_NAIVE_47 195.9
B_CELL_NAIVE_48 195.8
B_CELL_NAIVE_49 195.3
B_CELL_NAIVE_50 194.6
B_CELL_NAIVE_51 193.8
B_CELL_NAIVE_52 192.8
B_CELL_NAIVE_53 191.9
B_CELL_NAIVE_54 190.4
B_CELL_NAIVE_55 188.6
B_CELL_NAIVE_56 187.4
B_CELL_NAIVE_57 185.6
B_CELL_NAIVE_58 184.8
B_CELL_NAIVE_59 183.7
B_CELL_NAIVE_60 183.1
B_CELL_NAIVE_61 181.5
B_CELL_NAIVE_62 180.2
B_CELL_NAIVE_63 177.6
B_CELL_NAIVE_64 176.4
B_CELL_NAIVE_65 175.4
B_CELL_NAIVE_66 174.0
B_CELL_NAIVE_67 171.8
B_CELL_NAIVE_68 170.9
B_CELL_NAIVE_69 170.2
B_CELL_NAIVE_70 169.9
B_CELL_NAIVE_71 167.6
B_CELL_NAIVE_72 167.3
B_CELL_NAIVE_73 166.2
B_CELL_NAIVE_74 165.9
B_CELL_NAIVE_75 165.3
B_CELL_NAIVE_76 165.2
B_CELL_NAIVE_77 163.7
B_CELL_NAIVE_78 162.1
B_CELL_NAIVE_79 161.2
B_CELL_NAIVE_80 159.0
B_CELL_NAIVE_81 154.7
B_CELL_NAIVE_82 154.2
B_CELL_NAIVE_83 153.6
B_CELL_NAIVE_84 149.4
B_CELL_NAIVE_85 148.9
B_CELL_NAIVE_86 148.8
B_CELL_NAIVE_87 148.3
B_CELL_NAIVE_88 142.1
B_CELL_NAIVE_89 142.0
B_CELL_NAIVE_90 138.2
B_CELL_NAIVE_91 117.5
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