A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
76.4
nTPM
Monaco:
331.8
nTPM
Schmiedel:
199.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.4
HPA sample
nTPM
Memory B-cell nTPM: 76.4
Samples: 6
Max nTPM: 114.0
Min nTPM: 58.6
P10809_1017
58.6
P10809_1025
78.3
P10809_1044
114.0
P10809_1063
63.7
P10809_1092
70.5
P10809_1105
73.2
Naive B-cell nTPM: 67.0
Samples: 6
Max nTPM: 137.1
Min nTPM: 29.1
P10809_1011
29.1
P10809_1029
49.2
P10809_1048
137.1
P10809_1067
58.7
P10809_1091
67.9
P10809_1104
59.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
331.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 185.3
Samples: 4
Max nTPM: 192.7
Min nTPM: 179.7
RHH5310_R3677
192.7
RHH5218_R3590
184.3
RHH5247_R3619
184.5
RHH5276_R3648
179.7
Naive B-cell nTPM: 149.1
Samples: 4
Max nTPM: 202.3
Min nTPM: 83.6
RHH5308_R3675
151.9
RHH5216_R3588
202.3
RHH5245_R3617
83.6
RHH5274_R3646
158.6
Non-switched memory B-cell nTPM: 179.8
Samples: 4
Max nTPM: 208.0
Min nTPM: 165.5
RHH5309_R3676
170.8
RHH5217_R3589
208.0
RHH5246_R3618
174.9
RHH5275_R3647
165.5
Plasmablast nTPM: 331.8
Samples: 4
Max nTPM: 340.6
Min nTPM: 321.2
RHH5312_R3679
321.2
RHH5220_R3592
329.3
RHH5249_R3621
340.6
RHH5278_R3650
336.1
Switched memory B-cell nTPM: 191.2
Samples: 4
Max nTPM: 223.9
Min nTPM: 166.6
RHH5311_R3678
166.6
RHH5219_R3591
192.1
RHH5248_R3620
223.9
RHH5277_R3649
182.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
199.8
Schmiedel sample id
TPM
Naive B-cell TPM: 199.8
Samples: 91
Max TPM: 357.7
Min TPM: 117.5
B_CELL_NAIVE_1
357.7
B_CELL_NAIVE_2
327.3
B_CELL_NAIVE_3
303.5
B_CELL_NAIVE_4
284.9
B_CELL_NAIVE_5
272.6
B_CELL_NAIVE_6
265.0
B_CELL_NAIVE_7
256.5
B_CELL_NAIVE_8
248.9
B_CELL_NAIVE_9
248.6
B_CELL_NAIVE_10
243.7
B_CELL_NAIVE_11
241.0
B_CELL_NAIVE_12
240.5
B_CELL_NAIVE_13
239.6
B_CELL_NAIVE_14
236.3
B_CELL_NAIVE_15
235.4
B_CELL_NAIVE_16
232.8
B_CELL_NAIVE_17
232.6
B_CELL_NAIVE_18
231.7
B_CELL_NAIVE_19
229.2
B_CELL_NAIVE_20
221.9
B_CELL_NAIVE_21
221.7
B_CELL_NAIVE_22
220.7
B_CELL_NAIVE_23
220.2
B_CELL_NAIVE_24
217.5
B_CELL_NAIVE_25
215.2
B_CELL_NAIVE_26
214.0
B_CELL_NAIVE_27
213.0
B_CELL_NAIVE_28
212.5
B_CELL_NAIVE_29
210.0
B_CELL_NAIVE_30
207.8
B_CELL_NAIVE_31
207.4
B_CELL_NAIVE_32
207.3
B_CELL_NAIVE_33
207.2
B_CELL_NAIVE_34
206.2
B_CELL_NAIVE_35
206.1
B_CELL_NAIVE_36
205.1
B_CELL_NAIVE_37
200.8
B_CELL_NAIVE_38
200.5
B_CELL_NAIVE_39
200.1
B_CELL_NAIVE_40
199.9
B_CELL_NAIVE_41
199.3
B_CELL_NAIVE_42
199.0
B_CELL_NAIVE_43
198.7
B_CELL_NAIVE_44
197.5
B_CELL_NAIVE_45
197.3
B_CELL_NAIVE_46
196.0
B_CELL_NAIVE_47
195.9
B_CELL_NAIVE_48
195.8
B_CELL_NAIVE_49
195.3
B_CELL_NAIVE_50
194.6
B_CELL_NAIVE_51
193.8
B_CELL_NAIVE_52
192.8
B_CELL_NAIVE_53
191.9
B_CELL_NAIVE_54
190.4
B_CELL_NAIVE_55
188.6
B_CELL_NAIVE_56
187.4
B_CELL_NAIVE_57
185.6
B_CELL_NAIVE_58
184.8
B_CELL_NAIVE_59
183.7
B_CELL_NAIVE_60
183.1
B_CELL_NAIVE_61
181.5
B_CELL_NAIVE_62
180.2
B_CELL_NAIVE_63
177.6
B_CELL_NAIVE_64
176.4
B_CELL_NAIVE_65
175.4
B_CELL_NAIVE_66
174.0
B_CELL_NAIVE_67
171.8
B_CELL_NAIVE_68
170.9
B_CELL_NAIVE_69
170.2
B_CELL_NAIVE_70
169.9
B_CELL_NAIVE_71
167.6
B_CELL_NAIVE_72
167.3
B_CELL_NAIVE_73
166.2
B_CELL_NAIVE_74
165.9
B_CELL_NAIVE_75
165.3
B_CELL_NAIVE_76
165.2
B_CELL_NAIVE_77
163.7
B_CELL_NAIVE_78
162.1
B_CELL_NAIVE_79
161.2
B_CELL_NAIVE_80
159.0
B_CELL_NAIVE_81
154.7
B_CELL_NAIVE_82
154.2
B_CELL_NAIVE_83
153.6
B_CELL_NAIVE_84
149.4
B_CELL_NAIVE_85
148.9
B_CELL_NAIVE_86
148.8
B_CELL_NAIVE_87
148.3
B_CELL_NAIVE_88
142.1
B_CELL_NAIVE_89
142.0
B_CELL_NAIVE_90
138.2
B_CELL_NAIVE_91
117.5
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