A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
64.4
nTPM
Monaco:
230.7
nTPM
Schmiedel:
171.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.4
HPA sample
nTPM
NK-cell nTPM: 64.4
Samples: 6
Max nTPM: 77.7
Min nTPM: 28.3
P10809_1013
66.2
P10809_1033
77.0
P10809_1052
73.9
P10809_1071
63.5
P10809_1093
28.3
P10809_1103
77.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
230.7
Monaco sample
nTPM
NK-cell nTPM: 230.7
Samples: 4
Max nTPM: 299.7
Min nTPM: 185.6
RHH5316_R3683
202.8
RHH5224_R3596
299.7
RHH5253_R3625
185.6
RHH5282_R3654
234.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
171.1
Schmiedel sample id
TPM
NK-cell TPM: 171.1
Samples: 90
Max TPM: 288.8
Min TPM: 119.6
NK_1
288.8
NK_2
255.9
NK_3
252.9
NK_4
242.3
NK_5
241.8
NK_6
237.4
NK_7
230.3
NK_8
224.7
NK_9
224.3
NK_10
224.0
NK_11
219.7
NK_12
216.8
NK_13
216.3
NK_14
206.5
NK_15
206.3
NK_16
200.7
NK_17
199.4
NK_18
194.6
NK_19
194.3
NK_20
194.1
NK_21
193.8
NK_22
192.3
NK_23
191.0
NK_24
189.0
NK_25
188.1
NK_26
187.8
NK_27
186.1
NK_28
183.6
NK_29
178.5
NK_30
177.7
NK_31
177.0
NK_32
175.8
NK_33
174.2
NK_34
174.0
NK_35
172.6
NK_36
171.3
NK_37
171.1
NK_38
170.6
NK_39
169.5
NK_40
168.3
NK_41
167.6
NK_42
166.1
NK_43
166.0
NK_44
164.8
NK_45
162.6
NK_46
161.9
NK_47
160.4
NK_48
160.2
NK_49
160.2
NK_50
159.8
NK_51
157.8
NK_52
157.6
NK_53
157.2
NK_54
156.5
NK_55
154.5
NK_56
154.4
NK_57
154.4
NK_58
152.9
NK_59
152.5
NK_60
152.1
NK_61
151.0
NK_62
150.5
NK_63
149.1
NK_64
148.9
NK_65
147.9
NK_66
147.6
NK_67
146.6
NK_68
145.2
NK_69
144.9
NK_70
144.5
NK_71
144.3
NK_72
144.3
NK_73
143.3
NK_74
141.8
NK_75
141.0
NK_76
140.1
NK_77
140.0
NK_78
139.1
NK_79
138.3
NK_80
135.9
NK_81
134.7
NK_82
134.3
NK_83
133.4
NK_84
129.4
NK_85
129.4
NK_86
125.3
NK_87
121.4
NK_88
120.8
NK_89
120.0
NK_90
119.6
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