A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
87.4
nTPM
Monaco:
208.9
nTPM
Schmiedel:
145.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.4
HPA sample
nTPM
Classical monocyte nTPM: 74.0
Samples: 6
Max nTPM: 102.1
Min nTPM: 59.5
P10809_1003
62.8
P10809_1020
77.5
P10809_1039
102.1
P10809_1058
59.5
P10809_1080
70.6
P10809_1107
71.4
Intermediate monocyte nTPM: 87.4
Samples: 6
Max nTPM: 107.4
Min nTPM: 60.5
P10809_1004
60.5
P10809_1023
93.9
P10809_1042
107.4
P10809_1061
94.7
P10809_1081
78.0
P10809_1108
90.0
Non-classical monocyte nTPM: 80.8
Samples: 5
Max nTPM: 91.8
Min nTPM: 65.6
P10809_1005
65.6
P10809_1053
89.6
P10809_1072
91.8
P10809_1082
69.8
P10809_1109
87.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
208.9
Monaco sample
nTPM
Classical monocyte nTPM: 208.9
Samples: 4
Max nTPM: 239.5
Min nTPM: 189.5
RHH5313_R3680
196.2
RHH5221_R3593
210.3
RHH5250_R3622
239.5
RHH5279_R3651
189.5
Intermediate monocyte nTPM: 197.4
Samples: 4
Max nTPM: 227.5
Min nTPM: 154.6
RHH5314_R3681
182.8
RHH5222_R3594
154.6
RHH5251_R3623
227.5
RHH5280_R3652
224.7
Non-classical monocyte nTPM: 196.6
Samples: 4
Max nTPM: 229.4
Min nTPM: 148.5
RHH5315_R3682
180.9
RHH5223_R3595
148.5
RHH5252_R3624
227.7
RHH5281_R3653
229.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
145.6
Schmiedel sample id
TPM
Classical monocyte TPM: 145.6
Samples: 91
Max TPM: 179.6
Min TPM: 102.0
MONOCYTES_1
179.6
MONOCYTES_2
175.7
MONOCYTES_3
171.2
MONOCYTES_4
170.2
MONOCYTES_5
170.1
MONOCYTES_6
165.9
MONOCYTES_7
165.5
MONOCYTES_8
165.1
MONOCYTES_9
162.2
MONOCYTES_10
162.2
MONOCYTES_11
161.4
MONOCYTES_12
161.0
MONOCYTES_13
159.4
MONOCYTES_14
158.9
MONOCYTES_15
158.9
MONOCYTES_16
158.5
MONOCYTES_17
158.2
MONOCYTES_18
158.1
MONOCYTES_19
158.1
MONOCYTES_20
156.7
MONOCYTES_21
156.6
MONOCYTES_22
156.5
MONOCYTES_23
156.0
MONOCYTES_24
155.7
MONOCYTES_25
155.1
MONOCYTES_26
155.0
MONOCYTES_27
154.7
MONOCYTES_28
154.7
MONOCYTES_29
154.6
MONOCYTES_30
153.6
MONOCYTES_31
152.9
MONOCYTES_32
152.6
MONOCYTES_33
152.3
MONOCYTES_34
152.0
MONOCYTES_35
151.4
MONOCYTES_36
151.2
MONOCYTES_37
150.6
MONOCYTES_38
149.9
MONOCYTES_39
149.6
MONOCYTES_40
149.3
MONOCYTES_41
149.2
MONOCYTES_42
148.1
MONOCYTES_43
147.3
MONOCYTES_44
146.2
MONOCYTES_45
145.4
MONOCYTES_46
145.1
MONOCYTES_47
144.7
MONOCYTES_48
143.7
MONOCYTES_49
143.3
MONOCYTES_50
143.1
MONOCYTES_51
142.6
MONOCYTES_52
142.3
MONOCYTES_53
142.2
MONOCYTES_54
142.0
MONOCYTES_55
141.1
MONOCYTES_56
141.0
MONOCYTES_57
140.6
MONOCYTES_58
139.7
MONOCYTES_59
139.5
MONOCYTES_60
139.2
MONOCYTES_61
138.8
MONOCYTES_62
137.9
MONOCYTES_63
137.4
MONOCYTES_64
136.5
MONOCYTES_65
136.1
MONOCYTES_66
135.6
MONOCYTES_67
134.9
MONOCYTES_68
134.2
MONOCYTES_69
133.8
MONOCYTES_70
133.7
MONOCYTES_71
133.3
MONOCYTES_72
132.8
MONOCYTES_73
132.8
MONOCYTES_74
132.5
MONOCYTES_75
132.4
MONOCYTES_76
132.3
MONOCYTES_77
132.2
MONOCYTES_78
131.8
MONOCYTES_79
130.2
MONOCYTES_80
129.8
MONOCYTES_81
129.5
MONOCYTES_82
129.5
MONOCYTES_83
128.8
MONOCYTES_84
128.2
MONOCYTES_85
126.9
MONOCYTES_86
124.5
MONOCYTES_87
124.2
MONOCYTES_88
123.2
MONOCYTES_89
122.0
MONOCYTES_90
120.4
MONOCYTES_91
102.0
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Non-classical monocyte TPM: 145.3
Samples: 90
Max TPM: 215.8
Min TPM: 106.1
M2_1
215.8
M2_2
199.9
M2_3
197.6
M2_4
191.6
M2_5
190.8
M2_6
188.8
M2_7
178.9
M2_8
168.0
M2_9
165.6
M2_10
165.4
M2_11
165.2
M2_12
165.2
M2_13
164.8
M2_14
164.3
M2_15
163.5
M2_16
162.7
M2_17
162.3
M2_18
161.5
M2_19
161.0
M2_20
160.4
M2_21
157.4
M2_22
157.0
M2_23
156.0
M2_24
155.6
M2_25
154.6
M2_26
153.9
M2_27
153.4
M2_28
153.3
M2_29
153.1
M2_30
152.7
M2_31
152.7
M2_32
151.8
M2_33
151.7
M2_34
151.3
M2_35
149.6
M2_36
149.3
M2_37
148.6
M2_38
148.1
M2_39
147.6
M2_40
147.3
M2_41
147.2
M2_42
146.8
M2_43
146.7
M2_44
146.1
M2_45
145.1
M2_46
144.6
M2_47
144.3
M2_48
143.7
M2_49
142.2
M2_50
142.1
M2_51
141.5
M2_52
141.2
M2_53
140.2
M2_54
138.1
M2_55
138.0
M2_56
136.9
M2_57
136.6
M2_58
136.3
M2_59
136.1
M2_60
135.7
M2_61
135.2
M2_62
134.9
M2_63
134.3
M2_64
132.8
M2_65
132.3
M2_66
129.5
M2_67
128.3
M2_68
128.1
M2_69
127.9
M2_70
127.4
M2_71
126.6
M2_72
126.3
M2_73
126.1
M2_74
126.0
M2_75
125.7
M2_76
124.6
M2_77
124.6
M2_78
124.5
M2_79
123.8
M2_80
123.3
M2_81
123.1
M2_82
122.4
M2_83
120.7
M2_84
118.2
M2_85
116.1
M2_86
111.0
M2_87
110.7
M2_88
109.9
M2_89
107.8
M2_90
106.1
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