A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
130.1
nTPM
Monaco:
461.0
nTPM
Schmiedel:
95.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
130.1
HPA sample
nTPM
Memory B-cell nTPM: 130.1
Samples: 6
Max nTPM: 267.0
Min nTPM: 55.6
P10809_1017
101.0
P10809_1025
133.2
P10809_1044
267.0
P10809_1063
98.1
P10809_1092
125.8
P10809_1105
55.6
Naive B-cell nTPM: 115.3
Samples: 6
Max nTPM: 335.6
Min nTPM: 37.3
P10809_1011
79.2
P10809_1029
107.9
P10809_1048
335.6
P10809_1067
37.3
P10809_1091
74.9
P10809_1104
56.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
461.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 310.0
Samples: 4
Max nTPM: 382.7
Min nTPM: 233.8
RHH5310_R3677
233.8
RHH5218_R3590
382.7
RHH5247_R3619
348.4
RHH5276_R3648
275.0
Naive B-cell nTPM: 336.5
Samples: 4
Max nTPM: 511.9
Min nTPM: 203.3
RHH5308_R3675
511.9
RHH5216_R3588
203.3
RHH5245_R3617
233.7
RHH5274_R3646
397.0
Non-switched memory B-cell nTPM: 461.0
Samples: 4
Max nTPM: 613.4
Min nTPM: 297.6
RHH5309_R3676
542.9
RHH5217_R3589
297.6
RHH5246_R3618
613.4
RHH5275_R3647
390.1
Plasmablast nTPM: 172.3
Samples: 4
Max nTPM: 239.7
Min nTPM: 90.6
RHH5312_R3679
90.6
RHH5220_R3592
206.2
RHH5249_R3621
239.7
RHH5278_R3650
152.6
Switched memory B-cell nTPM: 403.6
Samples: 4
Max nTPM: 755.8
Min nTPM: 216.9
RHH5311_R3678
238.3
RHH5219_R3591
755.8
RHH5248_R3620
216.9
RHH5277_R3649
403.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.9
Schmiedel sample id
TPM
Naive B-cell TPM: 95.9
Samples: 91
Max TPM: 130.1
Min TPM: 62.7
B_CELL_NAIVE_1
130.1
B_CELL_NAIVE_2
122.1
B_CELL_NAIVE_3
122.1
B_CELL_NAIVE_4
115.3
B_CELL_NAIVE_5
114.7
B_CELL_NAIVE_6
113.8
B_CELL_NAIVE_7
113.7
B_CELL_NAIVE_8
113.0
B_CELL_NAIVE_9
112.6
B_CELL_NAIVE_10
112.6
B_CELL_NAIVE_11
111.6
B_CELL_NAIVE_12
111.6
B_CELL_NAIVE_13
109.5
B_CELL_NAIVE_14
109.2
B_CELL_NAIVE_15
109.0
B_CELL_NAIVE_16
108.4
B_CELL_NAIVE_17
107.3
B_CELL_NAIVE_18
107.3
B_CELL_NAIVE_19
107.1
B_CELL_NAIVE_20
105.6
B_CELL_NAIVE_21
105.5
B_CELL_NAIVE_22
105.3
B_CELL_NAIVE_23
104.9
B_CELL_NAIVE_24
104.6
B_CELL_NAIVE_25
104.4
B_CELL_NAIVE_26
104.3
B_CELL_NAIVE_27
104.2
B_CELL_NAIVE_28
103.6
B_CELL_NAIVE_29
103.2
B_CELL_NAIVE_30
103.1
B_CELL_NAIVE_31
103.1
B_CELL_NAIVE_32
102.4
B_CELL_NAIVE_33
102.1
B_CELL_NAIVE_34
101.5
B_CELL_NAIVE_35
101.4
B_CELL_NAIVE_36
101.1
B_CELL_NAIVE_37
100.8
B_CELL_NAIVE_38
100.1
B_CELL_NAIVE_39
99.7
B_CELL_NAIVE_40
99.5
B_CELL_NAIVE_41
99.4
B_CELL_NAIVE_42
99.3
B_CELL_NAIVE_43
99.2
B_CELL_NAIVE_44
99.2
B_CELL_NAIVE_45
99.2
B_CELL_NAIVE_46
98.3
B_CELL_NAIVE_47
98.2
B_CELL_NAIVE_48
97.6
B_CELL_NAIVE_49
97.5
B_CELL_NAIVE_50
95.1
B_CELL_NAIVE_51
95.0
B_CELL_NAIVE_52
95.0
B_CELL_NAIVE_53
94.9
B_CELL_NAIVE_54
93.8
B_CELL_NAIVE_55
93.8
B_CELL_NAIVE_56
93.7
B_CELL_NAIVE_57
93.4
B_CELL_NAIVE_58
93.3
B_CELL_NAIVE_59
92.5
B_CELL_NAIVE_60
91.8
B_CELL_NAIVE_61
91.3
B_CELL_NAIVE_62
90.7
B_CELL_NAIVE_63
90.6
B_CELL_NAIVE_64
90.2
B_CELL_NAIVE_65
90.0
B_CELL_NAIVE_66
89.9
B_CELL_NAIVE_67
89.7
B_CELL_NAIVE_68
89.3
B_CELL_NAIVE_69
88.8
B_CELL_NAIVE_70
87.4
B_CELL_NAIVE_71
87.1
B_CELL_NAIVE_72
85.9
B_CELL_NAIVE_73
84.8
B_CELL_NAIVE_74
81.9
B_CELL_NAIVE_75
81.0
B_CELL_NAIVE_76
80.4
B_CELL_NAIVE_77
79.9
B_CELL_NAIVE_78
79.1
B_CELL_NAIVE_79
78.3
B_CELL_NAIVE_80
77.8
B_CELL_NAIVE_81
77.6
B_CELL_NAIVE_82
77.4
B_CELL_NAIVE_83
77.2
B_CELL_NAIVE_84
76.3
B_CELL_NAIVE_85
75.3
B_CELL_NAIVE_86
74.7
B_CELL_NAIVE_87
68.0
B_CELL_NAIVE_88
66.3
B_CELL_NAIVE_89
65.7
B_CELL_NAIVE_90
64.4
B_CELL_NAIVE_91
62.7
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