A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.3
nTPM
Monaco:
68.6
nTPM
Schmiedel:
18.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.3
HPA sample
nTPM
NK-cell nTPM: 29.3
Samples: 6
Max nTPM: 53.8
Min nTPM: 7.5
P10809_1013
53.8
P10809_1033
23.3
P10809_1052
25.9
P10809_1071
41.2
P10809_1093
7.5
P10809_1103
24.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.6
Monaco sample
nTPM
NK-cell nTPM: 68.6
Samples: 4
Max nTPM: 111.3
Min nTPM: 50.5
RHH5316_R3683
111.3
RHH5224_R3596
50.5
RHH5253_R3625
52.9
RHH5282_R3654
59.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.8
Schmiedel sample id
TPM
NK-cell TPM: 18.8
Samples: 90
Max TPM: 27.5
Min TPM: 8.9
NK_1
27.5
NK_2
26.2
NK_3
25.1
NK_4
25.1
NK_5
24.5
NK_6
24.3
NK_7
24.1
NK_8
24.0
NK_9
23.4
NK_10
23.2
NK_11
23.2
NK_12
22.9
NK_13
22.8
NK_14
22.3
NK_15
22.3
NK_16
22.2
NK_17
22.0
NK_18
21.9
NK_19
21.9
NK_20
21.8
NK_21
21.7
NK_22
21.5
NK_23
21.4
NK_24
21.4
NK_25
21.3
NK_26
21.0
NK_27
20.9
NK_28
20.9
NK_29
20.9
NK_30
20.9
NK_31
20.8
NK_32
20.7
NK_33
20.5
NK_34
20.5
NK_35
20.2
NK_36
20.2
NK_37
20.2
NK_38
20.1
NK_39
19.9
NK_40
19.9
NK_41
19.6
NK_42
19.6
NK_43
19.5
NK_44
19.4
NK_45
19.2
NK_46
19.2
NK_47
19.1
NK_48
19.1
NK_49
19.1
NK_50
18.9
NK_51
18.8
NK_52
18.8
NK_53
18.7
NK_54
18.4
NK_55
18.3
NK_56
18.0
NK_57
17.9
NK_58
17.7
NK_59
17.5
NK_60
17.5
NK_61
17.2
NK_62
17.2
NK_63
17.1
NK_64
16.8
NK_65
16.8
NK_66
16.8
NK_67
16.8
NK_68
16.7
NK_69
16.6
NK_70
16.4
NK_71
16.3
NK_72
15.7
NK_73
15.7
NK_74
15.3
NK_75
14.9
NK_76
14.9
NK_77
14.3
NK_78
14.2
NK_79
14.0
NK_80
13.8
NK_81
13.3
NK_82
12.7
NK_83
12.6
NK_84
12.6
NK_85
12.2
NK_86
12.1
NK_87
12.0
NK_88
11.8
NK_89
10.2
NK_90
8.9
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