A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
358.5
nTPM
Monaco:
970.0
nTPM
Schmiedel:
164.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
358.5
HPA sample
nTPM
Classical monocyte nTPM: 179.7
Samples: 6
Max nTPM: 555.9
Min nTPM: 53.8
P10809_1003
136.2
P10809_1020
120.5
P10809_1039
555.9
P10809_1058
80.7
P10809_1080
53.8
P10809_1107
131.3
Intermediate monocyte nTPM: 267.6
Samples: 6
Max nTPM: 516.2
Min nTPM: 96.0
P10809_1004
404.7
P10809_1023
255.9
P10809_1042
218.8
P10809_1061
114.0
P10809_1081
96.0
P10809_1108
516.2
Non-classical monocyte nTPM: 358.5
Samples: 5
Max nTPM: 670.9
Min nTPM: 179.3
P10809_1005
501.3
P10809_1053
179.3
P10809_1072
233.3
P10809_1082
207.6
P10809_1109
670.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
970.0
Monaco sample
nTPM
Classical monocyte nTPM: 515.2
Samples: 4
Max nTPM: 674.4
Min nTPM: 384.6
RHH5313_R3680
384.6
RHH5221_R3593
674.4
RHH5250_R3622
415.9
RHH5279_R3651
585.7
Intermediate monocyte nTPM: 970.0
Samples: 4
Max nTPM: 1362.3
Min nTPM: 648.5
RHH5314_R3681
1362.3
RHH5222_R3594
1070.2
RHH5251_R3623
799.1
RHH5280_R3652
648.5
Non-classical monocyte nTPM: 790.4
Samples: 4
Max nTPM: 1037.4
Min nTPM: 503.3
RHH5315_R3682
1037.4
RHH5223_R3595
790.5
RHH5252_R3624
830.5
RHH5281_R3653
503.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
164.6
Schmiedel sample id
TPM
Classical monocyte TPM: 72.6
Samples: 91
Max TPM: 97.6
Min TPM: 47.3
MONOCYTES_1
97.6
MONOCYTES_2
93.4
MONOCYTES_3
90.7
MONOCYTES_4
90.7
MONOCYTES_5
89.7
MONOCYTES_6
89.3
MONOCYTES_7
87.9
MONOCYTES_8
87.7
MONOCYTES_9
85.9
MONOCYTES_10
85.6
MONOCYTES_11
85.3
MONOCYTES_12
85.0
MONOCYTES_13
84.9
MONOCYTES_14
84.8
MONOCYTES_15
83.3
MONOCYTES_16
83.2
MONOCYTES_17
83.2
MONOCYTES_18
82.5
MONOCYTES_19
82.1
MONOCYTES_20
81.9
MONOCYTES_21
81.6
MONOCYTES_22
81.3
MONOCYTES_23
81.2
MONOCYTES_24
81.2
MONOCYTES_25
81.0
MONOCYTES_26
80.9
MONOCYTES_27
80.9
MONOCYTES_28
80.7
MONOCYTES_29
80.5
MONOCYTES_30
80.5
MONOCYTES_31
80.2
MONOCYTES_32
79.8
MONOCYTES_33
79.6
MONOCYTES_34
76.4
MONOCYTES_35
76.0
MONOCYTES_36
75.1
MONOCYTES_37
74.5
MONOCYTES_38
74.1
MONOCYTES_39
73.8
MONOCYTES_40
73.8
MONOCYTES_41
73.7
MONOCYTES_42
73.0
MONOCYTES_43
72.5
MONOCYTES_44
72.3
MONOCYTES_45
72.3
MONOCYTES_46
72.0
MONOCYTES_47
71.7
MONOCYTES_48
71.5
MONOCYTES_49
70.4
MONOCYTES_50
70.0
MONOCYTES_51
69.6
MONOCYTES_52
68.4
MONOCYTES_53
68.3
MONOCYTES_54
68.3
MONOCYTES_55
67.5
MONOCYTES_56
67.1
MONOCYTES_57
67.0
MONOCYTES_58
66.8
MONOCYTES_59
66.6
MONOCYTES_60
66.6
MONOCYTES_61
66.5
MONOCYTES_62
66.2
MONOCYTES_63
66.1
MONOCYTES_64
65.6
MONOCYTES_65
65.5
MONOCYTES_66
65.5
MONOCYTES_67
65.2
MONOCYTES_68
64.9
MONOCYTES_69
64.8
MONOCYTES_70
64.5
MONOCYTES_71
64.3
MONOCYTES_72
64.3
MONOCYTES_73
64.1
MONOCYTES_74
63.9
MONOCYTES_75
63.4
MONOCYTES_76
63.1
MONOCYTES_77
62.9
MONOCYTES_78
62.7
MONOCYTES_79
62.5
MONOCYTES_80
61.8
MONOCYTES_81
61.1
MONOCYTES_82
60.6
MONOCYTES_83
60.6
MONOCYTES_84
59.0
MONOCYTES_85
57.2
MONOCYTES_86
55.7
MONOCYTES_87
55.6
MONOCYTES_88
54.8
MONOCYTES_89
52.1
MONOCYTES_90
47.3
MONOCYTES_91
47.3
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Non-classical monocyte TPM: 164.6
Samples: 90
Max TPM: 211.4
Min TPM: 124.4
M2_1
211.4
M2_2
208.1
M2_3
207.5
M2_4
201.1
M2_5
199.6
M2_6
197.5
M2_7
194.9
M2_8
193.5
M2_9
190.0
M2_10
189.5
M2_11
188.0
M2_12
187.7
M2_13
184.1
M2_14
184.0
M2_15
180.3
M2_16
179.8
M2_17
179.5
M2_18
179.2
M2_19
178.7
M2_20
178.3
M2_21
177.0
M2_22
176.5
M2_23
176.3
M2_24
176.1
M2_25
176.0
M2_26
175.6
M2_27
175.2
M2_28
175.0
M2_29
173.8
M2_30
173.2
M2_31
172.5
M2_32
172.4
M2_33
171.4
M2_34
171.0
M2_35
169.9
M2_36
169.8
M2_37
169.5
M2_38
169.0
M2_39
167.8
M2_40
167.1
M2_41
167.0
M2_42
166.8
M2_43
166.7
M2_44
166.6
M2_45
166.2
M2_46
166.2
M2_47
166.2
M2_48
164.2
M2_49
163.3
M2_50
162.6
M2_51
162.2
M2_52
161.6
M2_53
160.8
M2_54
160.8
M2_55
159.7
M2_56
158.9
M2_57
158.6
M2_58
157.6
M2_59
157.5
M2_60
157.2
M2_61
155.0
M2_62
153.7
M2_63
153.6
M2_64
153.6
M2_65
152.4
M2_66
152.2
M2_67
151.6
M2_68
151.1
M2_69
150.6
M2_70
150.5
M2_71
148.3
M2_72
148.3
M2_73
147.4
M2_74
146.2
M2_75
144.0
M2_76
143.7
M2_77
143.3
M2_78
143.0
M2_79
142.5
M2_80
142.1
M2_81
141.0
M2_82
136.8
M2_83
135.3
M2_84
135.2
M2_85
135.0
M2_86
132.8
M2_87
128.8
M2_88
128.6
M2_89
125.7
M2_90
124.4
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