A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
122.9
nTPM
Monaco:
861.1
nTPM
Schmiedel:
121.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.9
HPA sample
nTPM
Memory B-cell nTPM: 122.9
Samples: 6
Max nTPM: 178.5
Min nTPM: 72.0
P10809_1017
178.5
P10809_1025
161.6
P10809_1044
72.0
P10809_1063
96.4
P10809_1092
137.1
P10809_1105
91.7
Naive B-cell nTPM: 90.4
Samples: 6
Max nTPM: 135.7
Min nTPM: 61.4
P10809_1011
100.7
P10809_1029
88.6
P10809_1048
135.7
P10809_1067
67.4
P10809_1091
88.5
P10809_1104
61.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
861.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 491.5
Samples: 4
Max nTPM: 738.4
Min nTPM: 339.5
RHH5310_R3677
469.5
RHH5218_R3590
738.4
RHH5247_R3619
418.7
RHH5276_R3648
339.5
Naive B-cell nTPM: 587.5
Samples: 4
Max nTPM: 753.9
Min nTPM: 496.5
RHH5308_R3675
498.6
RHH5216_R3588
601.1
RHH5245_R3617
753.9
RHH5274_R3646
496.5
Non-switched memory B-cell nTPM: 861.1
Samples: 4
Max nTPM: 1167.0
Min nTPM: 674.2
RHH5309_R3676
888.2
RHH5217_R3589
1167.0
RHH5246_R3618
714.9
RHH5275_R3647
674.2
Plasmablast nTPM: 649.0
Samples: 4
Max nTPM: 755.5
Min nTPM: 566.2
RHH5312_R3679
755.5
RHH5220_R3592
566.2
RHH5249_R3621
609.6
RHH5278_R3650
664.7
Switched memory B-cell nTPM: 661.8
Samples: 4
Max nTPM: 767.3
Min nTPM: 565.9
RHH5311_R3678
696.1
RHH5219_R3591
565.9
RHH5248_R3620
767.3
RHH5277_R3649
617.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
121.1
Schmiedel sample id
TPM
Naive B-cell TPM: 121.1
Samples: 91
Max TPM: 172.0
Min TPM: 95.0
B_CELL_NAIVE_1
172.0
B_CELL_NAIVE_2
162.2
B_CELL_NAIVE_3
162.0
B_CELL_NAIVE_4
160.6
B_CELL_NAIVE_5
158.2
B_CELL_NAIVE_6
146.6
B_CELL_NAIVE_7
143.9
B_CELL_NAIVE_8
143.2
B_CELL_NAIVE_9
141.7
B_CELL_NAIVE_10
141.2
B_CELL_NAIVE_11
140.6
B_CELL_NAIVE_12
139.7
B_CELL_NAIVE_13
139.6
B_CELL_NAIVE_14
139.5
B_CELL_NAIVE_15
137.4
B_CELL_NAIVE_16
136.7
B_CELL_NAIVE_17
136.4
B_CELL_NAIVE_18
135.0
B_CELL_NAIVE_19
133.4
B_CELL_NAIVE_20
132.3
B_CELL_NAIVE_21
131.8
B_CELL_NAIVE_22
130.8
B_CELL_NAIVE_23
130.6
B_CELL_NAIVE_24
130.4
B_CELL_NAIVE_25
130.3
B_CELL_NAIVE_26
129.4
B_CELL_NAIVE_27
129.2
B_CELL_NAIVE_28
128.9
B_CELL_NAIVE_29
128.6
B_CELL_NAIVE_30
127.6
B_CELL_NAIVE_31
127.0
B_CELL_NAIVE_32
126.6
B_CELL_NAIVE_33
125.8
B_CELL_NAIVE_34
125.2
B_CELL_NAIVE_35
124.5
B_CELL_NAIVE_36
122.9
B_CELL_NAIVE_37
122.7
B_CELL_NAIVE_38
122.4
B_CELL_NAIVE_39
120.9
B_CELL_NAIVE_40
120.3
B_CELL_NAIVE_41
120.3
B_CELL_NAIVE_42
120.0
B_CELL_NAIVE_43
119.9
B_CELL_NAIVE_44
119.1
B_CELL_NAIVE_45
118.5
B_CELL_NAIVE_46
117.2
B_CELL_NAIVE_47
116.4
B_CELL_NAIVE_48
116.4
B_CELL_NAIVE_49
115.9
B_CELL_NAIVE_50
115.6
B_CELL_NAIVE_51
115.5
B_CELL_NAIVE_52
114.8
B_CELL_NAIVE_53
114.7
B_CELL_NAIVE_54
114.0
B_CELL_NAIVE_55
113.8
B_CELL_NAIVE_56
113.7
B_CELL_NAIVE_57
113.6
B_CELL_NAIVE_58
113.2
B_CELL_NAIVE_59
113.1
B_CELL_NAIVE_60
112.9
B_CELL_NAIVE_61
112.1
B_CELL_NAIVE_62
111.7
B_CELL_NAIVE_63
111.7
B_CELL_NAIVE_64
111.1
B_CELL_NAIVE_65
110.9
B_CELL_NAIVE_66
110.7
B_CELL_NAIVE_67
109.8
B_CELL_NAIVE_68
109.7
B_CELL_NAIVE_69
109.6
B_CELL_NAIVE_70
109.6
B_CELL_NAIVE_71
108.7
B_CELL_NAIVE_72
107.2
B_CELL_NAIVE_73
107.0
B_CELL_NAIVE_74
106.7
B_CELL_NAIVE_75
106.2
B_CELL_NAIVE_76
105.7
B_CELL_NAIVE_77
104.4
B_CELL_NAIVE_78
104.4
B_CELL_NAIVE_79
103.8
B_CELL_NAIVE_80
103.3
B_CELL_NAIVE_81
102.8
B_CELL_NAIVE_82
102.7
B_CELL_NAIVE_83
100.9
B_CELL_NAIVE_84
100.6
B_CELL_NAIVE_85
100.4
B_CELL_NAIVE_86
99.8
B_CELL_NAIVE_87
99.6
B_CELL_NAIVE_88
99.5
B_CELL_NAIVE_89
97.6
B_CELL_NAIVE_90
96.3
B_CELL_NAIVE_91
95.0
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The Human Protein Atlas project is funded
