A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.5
nTPM
Monaco:
76.5
nTPM
Schmiedel:
73.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.5
HPA sample
nTPM
Memory B-cell nTPM: 5.2
Samples: 6
Max nTPM: 6.8
Min nTPM: 3.7
P10809_1017
6.8
P10809_1025
3.7
P10809_1044
6.6
P10809_1063
4.2
P10809_1092
5.8
P10809_1105
3.8
Naive B-cell nTPM: 5.5
Samples: 6
Max nTPM: 8.8
Min nTPM: 4.3
P10809_1011
8.8
P10809_1029
5.1
P10809_1048
4.3
P10809_1067
5.2
P10809_1091
4.7
P10809_1104
4.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 54.4
Samples: 4
Max nTPM: 85.6
Min nTPM: 29.5
RHH5310_R3677
31.5
RHH5218_R3590
71.2
RHH5247_R3619
29.5
RHH5276_R3648
85.6
Naive B-cell nTPM: 76.5
Samples: 4
Max nTPM: 104.0
Min nTPM: 59.8
RHH5308_R3675
59.8
RHH5216_R3588
66.9
RHH5245_R3617
104.0
RHH5274_R3646
75.3
Non-switched memory B-cell nTPM: 57.2
Samples: 4
Max nTPM: 87.8
Min nTPM: 33.6
RHH5309_R3676
37.4
RHH5217_R3589
70.0
RHH5246_R3618
33.6
RHH5275_R3647
87.8
Plasmablast nTPM: 30.8
Samples: 4
Max nTPM: 39.7
Min nTPM: 18.3
RHH5312_R3679
39.7
RHH5220_R3592
18.3
RHH5249_R3621
26.4
RHH5278_R3650
38.6
Switched memory B-cell nTPM: 68.0
Samples: 4
Max nTPM: 90.2
Min nTPM: 30.5
RHH5311_R3678
30.5
RHH5219_R3591
73.0
RHH5248_R3620
90.2
RHH5277_R3649
78.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.1
Schmiedel sample id
TPM
Naive B-cell TPM: 73.1
Samples: 91
Max TPM: 122.6
Min TPM: 51.7
B_CELL_NAIVE_1
122.6
B_CELL_NAIVE_2
115.2
B_CELL_NAIVE_3
108.7
B_CELL_NAIVE_4
106.5
B_CELL_NAIVE_5
101.0
B_CELL_NAIVE_6
95.5
B_CELL_NAIVE_7
93.6
B_CELL_NAIVE_8
92.5
B_CELL_NAIVE_9
89.4
B_CELL_NAIVE_10
87.8
B_CELL_NAIVE_11
87.1
B_CELL_NAIVE_12
83.5
B_CELL_NAIVE_13
82.9
B_CELL_NAIVE_14
82.9
B_CELL_NAIVE_15
82.8
B_CELL_NAIVE_16
81.3
B_CELL_NAIVE_17
81.2
B_CELL_NAIVE_18
80.8
B_CELL_NAIVE_19
80.7
B_CELL_NAIVE_20
79.4
B_CELL_NAIVE_21
79.4
B_CELL_NAIVE_22
79.3
B_CELL_NAIVE_23
78.7
B_CELL_NAIVE_24
78.7
B_CELL_NAIVE_25
77.9
B_CELL_NAIVE_26
77.7
B_CELL_NAIVE_27
77.4
B_CELL_NAIVE_28
77.1
B_CELL_NAIVE_29
76.9
B_CELL_NAIVE_30
76.6
B_CELL_NAIVE_31
75.9
B_CELL_NAIVE_32
74.4
B_CELL_NAIVE_33
74.0
B_CELL_NAIVE_34
73.5
B_CELL_NAIVE_35
73.5
B_CELL_NAIVE_36
72.8
B_CELL_NAIVE_37
72.8
B_CELL_NAIVE_38
72.6
B_CELL_NAIVE_39
72.5
B_CELL_NAIVE_40
72.4
B_CELL_NAIVE_41
71.6
B_CELL_NAIVE_42
71.6
B_CELL_NAIVE_43
70.7
B_CELL_NAIVE_44
70.5
B_CELL_NAIVE_45
70.4
B_CELL_NAIVE_46
70.4
B_CELL_NAIVE_47
70.3
B_CELL_NAIVE_48
69.9
B_CELL_NAIVE_49
69.9
B_CELL_NAIVE_50
69.8
B_CELL_NAIVE_51
69.8
B_CELL_NAIVE_52
69.7
B_CELL_NAIVE_53
69.2
B_CELL_NAIVE_54
68.8
B_CELL_NAIVE_55
68.7
B_CELL_NAIVE_56
68.4
B_CELL_NAIVE_57
68.3
B_CELL_NAIVE_58
67.7
B_CELL_NAIVE_59
67.6
B_CELL_NAIVE_60
67.5
B_CELL_NAIVE_61
67.4
B_CELL_NAIVE_62
67.0
B_CELL_NAIVE_63
66.6
B_CELL_NAIVE_64
66.3
B_CELL_NAIVE_65
66.2
B_CELL_NAIVE_66
66.0
B_CELL_NAIVE_67
65.8
B_CELL_NAIVE_68
63.5
B_CELL_NAIVE_69
63.1
B_CELL_NAIVE_70
63.1
B_CELL_NAIVE_71
62.9
B_CELL_NAIVE_72
62.7
B_CELL_NAIVE_73
62.3
B_CELL_NAIVE_74
62.3
B_CELL_NAIVE_75
62.2
B_CELL_NAIVE_76
62.1
B_CELL_NAIVE_77
61.9
B_CELL_NAIVE_78
61.8
B_CELL_NAIVE_79
61.0
B_CELL_NAIVE_80
60.9
B_CELL_NAIVE_81
60.7
B_CELL_NAIVE_82
60.3
B_CELL_NAIVE_83
60.0
B_CELL_NAIVE_84
59.6
B_CELL_NAIVE_85
58.7
B_CELL_NAIVE_86
57.3
B_CELL_NAIVE_87
57.1
B_CELL_NAIVE_88
56.7
B_CELL_NAIVE_89
56.7
B_CELL_NAIVE_90
54.5
B_CELL_NAIVE_91
51.7
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