A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.9
nTPM
Monaco:
55.4
nTPM
Schmiedel:
50.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.9
HPA sample
nTPM
NK-cell nTPM: 5.9
Samples: 6
Max nTPM: 10.4
Min nTPM: 1.2
P10809_1013
9.3
P10809_1033
2.7
P10809_1052
6.0
P10809_1071
1.2
P10809_1093
10.4
P10809_1103
5.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.4
Monaco sample
nTPM
NK-cell nTPM: 55.4
Samples: 4
Max nTPM: 74.7
Min nTPM: 38.7
RHH5316_R3683
51.3
RHH5224_R3596
38.7
RHH5253_R3625
74.7
RHH5282_R3654
56.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.1
Schmiedel sample id
TPM
NK-cell TPM: 50.1
Samples: 90
Max TPM: 84.3
Min TPM: 27.6
NK_1
84.3
NK_2
77.3
NK_3
77.1
NK_4
72.9
NK_5
71.5
NK_6
70.3
NK_7
69.4
NK_8
68.9
NK_9
67.6
NK_10
65.5
NK_11
61.1
NK_12
60.8
NK_13
60.3
NK_14
59.7
NK_15
59.3
NK_16
58.2
NK_17
57.9
NK_18
57.2
NK_19
56.8
NK_20
56.5
NK_21
56.5
NK_22
56.1
NK_23
55.8
NK_24
55.3
NK_25
55.3
NK_26
55.0
NK_27
54.6
NK_28
54.6
NK_29
54.3
NK_30
53.5
NK_31
52.9
NK_32
52.8
NK_33
52.6
NK_34
52.6
NK_35
52.4
NK_36
52.4
NK_37
51.9
NK_38
51.7
NK_39
51.6
NK_40
51.5
NK_41
51.4
NK_42
50.8
NK_43
50.6
NK_44
50.4
NK_45
49.5
NK_46
49.2
NK_47
48.5
NK_48
48.4
NK_49
47.6
NK_50
46.7
NK_51
46.7
NK_52
46.6
NK_53
46.4
NK_54
46.4
NK_55
45.7
NK_56
45.1
NK_57
44.3
NK_58
44.3
NK_59
44.3
NK_60
44.2
NK_61
44.0
NK_62
43.6
NK_63
43.6
NK_64
43.3
NK_65
42.9
NK_66
42.7
NK_67
42.6
NK_68
42.2
NK_69
41.9
NK_70
41.3
NK_71
41.3
NK_72
41.2
NK_73
41.1
NK_74
40.8
NK_75
40.7
NK_76
40.1
NK_77
40.0
NK_78
39.8
NK_79
39.5
NK_80
39.5
NK_81
38.6
NK_82
37.1
NK_83
37.1
NK_84
36.0
NK_85
35.8
NK_86
34.7
NK_87
33.2
NK_88
33.0
NK_89
32.2
NK_90
27.6
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