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BETA
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  • FAM13B
IMMUNE CELL MONOCYTES Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
Monocytes
Immune cell methods
MONOCYTES - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:5.7 nTPM
Monaco:70.6 nTPM
Schmiedel:71.3 TPM

MONOCYTES - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

5.7
HPA sample nTPM
Classical monocyte
nTPM: 2.2
Samples: 6

Max nTPM: 3.2
Min nTPM: 1.2
P10809_1003 3.2
P10809_1020 2.0
P10809_1039 1.2
P10809_1058 2.9
P10809_1080 2.0
P10809_1107 1.9
Intermediate monocyte
nTPM: 3.2
Samples: 6

Max nTPM: 4.4
Min nTPM: 2.0
P10809_1004 3.0
P10809_1023 4.4
P10809_1042 2.4
P10809_1061 2.0
P10809_1081 4.1
P10809_1108 3.5
Non-classical monocyte
nTPM: 5.7
Samples: 5

Max nTPM: 12.8
Min nTPM: 3.3
P10809_1005 4.5
P10809_1053 3.3
P10809_1072 12.8
P10809_1082 4.7
P10809_1109 3.3

MONOCYTES - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

70.6
Monaco sample nTPM
Classical monocyte
nTPM: 36.3
Samples: 4

Max nTPM: 41.3
Min nTPM: 29.6
RHH5313_R3680 29.6
RHH5221_R3593 33.8
RHH5250_R3622 40.5
RHH5279_R3651 41.3
Intermediate monocyte
nTPM: 50.9
Samples: 4

Max nTPM: 68.1
Min nTPM: 40.3
RHH5314_R3681 40.3
RHH5222_R3594 41.2
RHH5251_R3623 54.0
RHH5280_R3652 68.1
Non-classical monocyte
nTPM: 70.6
Samples: 4

Max nTPM: 91.9
Min nTPM: 61.1
RHH5315_R3682 61.1
RHH5223_R3595 61.9
RHH5252_R3624 91.9
RHH5281_R3653 67.6

MONOCYTES - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

71.3
Schmiedel sample id TPM
Classical monocyte
TPM: 27.8
Samples: 91

Max TPM: 36.0
Min TPM: 20.2
MONOCYTES_1 36.0
MONOCYTES_2 34.9
MONOCYTES_3 34.7
MONOCYTES_4 34.2
MONOCYTES_5 34.1
MONOCYTES_6 33.6
MONOCYTES_7 33.3
MONOCYTES_8 32.7
MONOCYTES_9 32.7
MONOCYTES_10 32.7
MONOCYTES_11 32.6
MONOCYTES_12 32.6
MONOCYTES_13 32.5
MONOCYTES_14 32.4
MONOCYTES_15 32.4
MONOCYTES_16 32.3
MONOCYTES_17 31.8
MONOCYTES_18 31.3
MONOCYTES_19 31.1
MONOCYTES_20 31.0
MONOCYTES_21 30.8
MONOCYTES_22 30.6
MONOCYTES_23 30.5
MONOCYTES_24 30.4
MONOCYTES_25 30.3
MONOCYTES_26 30.2
MONOCYTES_27 30.2
MONOCYTES_28 30.2
MONOCYTES_29 30.0
MONOCYTES_30 30.0
MONOCYTES_31 29.8
MONOCYTES_32 29.8
MONOCYTES_33 29.7
MONOCYTES_34 29.6
MONOCYTES_35 29.5
MONOCYTES_36 29.2
MONOCYTES_37 29.0
MONOCYTES_38 28.9
MONOCYTES_39 28.9
MONOCYTES_40 28.6
MONOCYTES_41 28.5
MONOCYTES_42 28.2
MONOCYTES_43 27.9
MONOCYTES_44 27.9
MONOCYTES_45 27.9
MONOCYTES_46 27.0
MONOCYTES_47 26.8
MONOCYTES_48 26.8
MONOCYTES_49 26.7
MONOCYTES_50 26.7
MONOCYTES_51 26.6
MONOCYTES_52 26.6
MONOCYTES_53 26.5
MONOCYTES_54 26.4
MONOCYTES_55 26.1
MONOCYTES_56 26.0
MONOCYTES_57 25.9
MONOCYTES_58 25.7
MONOCYTES_59 25.6
MONOCYTES_60 25.5
MONOCYTES_61 25.5
MONOCYTES_62 25.3
MONOCYTES_63 25.2
MONOCYTES_64 25.2
MONOCYTES_65 25.2
MONOCYTES_66 25.0
MONOCYTES_67 25.0
MONOCYTES_68 24.9
MONOCYTES_69 24.9
MONOCYTES_70 24.7
MONOCYTES_71 24.7
MONOCYTES_72 24.7
MONOCYTES_73 24.6
MONOCYTES_74 24.4
MONOCYTES_75 24.4
MONOCYTES_76 24.2
MONOCYTES_77 24.0
MONOCYTES_78 23.9
MONOCYTES_79 23.6
MONOCYTES_80 23.4
MONOCYTES_81 23.3
MONOCYTES_82 23.3
MONOCYTES_83 23.3
MONOCYTES_84 23.0
MONOCYTES_85 22.8
MONOCYTES_86 22.8
MONOCYTES_87 22.5
MONOCYTES_88 21.9
MONOCYTES_89 21.5
MONOCYTES_90 21.2
MONOCYTES_91 20.2
Show allShow less
Non-classical monocyte
TPM: 71.3
Samples: 90

Max TPM: 115.9
Min TPM: 49.6
M2_1 115.9
M2_2 106.1
M2_3 101.8
M2_4 100.2
M2_5 95.5
M2_6 94.9
M2_7 94.1
M2_8 93.6
M2_9 90.1
M2_10 89.7
M2_11 86.2
M2_12 86.0
M2_13 84.4
M2_14 81.7
M2_15 81.5
M2_16 81.5
M2_17 81.2
M2_18 80.2
M2_19 79.4
M2_20 79.3
M2_21 78.5
M2_22 77.2
M2_23 77.0
M2_24 76.6
M2_25 75.7
M2_26 74.6
M2_27 74.2
M2_28 74.1
M2_29 74.1
M2_30 73.7
M2_31 73.2
M2_32 73.2
M2_33 73.0
M2_34 73.0
M2_35 72.8
M2_36 72.5
M2_37 72.4
M2_38 72.1
M2_39 71.7
M2_40 71.5
M2_41 71.0
M2_42 70.2
M2_43 70.1
M2_44 70.0
M2_45 69.9
M2_46 69.6
M2_47 69.0
M2_48 67.9
M2_49 67.4
M2_50 67.3
M2_51 67.2
M2_52 67.2
M2_53 67.1
M2_54 66.8
M2_55 66.6
M2_56 66.2
M2_57 65.8
M2_58 65.4
M2_59 65.2
M2_60 64.8
M2_61 63.9
M2_62 63.5
M2_63 63.1
M2_64 63.1
M2_65 63.0
M2_66 63.0
M2_67 62.3
M2_68 62.1
M2_69 61.7
M2_70 61.3
M2_71 60.9
M2_72 60.9
M2_73 60.9
M2_74 60.6
M2_75 58.7
M2_76 58.6
M2_77 58.5
M2_78 58.4
M2_79 58.3
M2_80 58.2
M2_81 58.1
M2_82 57.6
M2_83 56.6
M2_84 56.4
M2_85 56.3
M2_86 55.6
M2_87 55.3
M2_88 54.8
M2_89 54.7
M2_90 49.6
Show allShow less

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