A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.7
nTPM
Monaco:
70.6
nTPM
Schmiedel:
71.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.7
HPA sample
nTPM
Classical monocyte nTPM: 2.2
Samples: 6
Max nTPM: 3.2
Min nTPM: 1.2
P10809_1003
3.2
P10809_1020
2.0
P10809_1039
1.2
P10809_1058
2.9
P10809_1080
2.0
P10809_1107
1.9
Intermediate monocyte nTPM: 3.2
Samples: 6
Max nTPM: 4.4
Min nTPM: 2.0
P10809_1004
3.0
P10809_1023
4.4
P10809_1042
2.4
P10809_1061
2.0
P10809_1081
4.1
P10809_1108
3.5
Non-classical monocyte nTPM: 5.7
Samples: 5
Max nTPM: 12.8
Min nTPM: 3.3
P10809_1005
4.5
P10809_1053
3.3
P10809_1072
12.8
P10809_1082
4.7
P10809_1109
3.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.6
Monaco sample
nTPM
Classical monocyte nTPM: 36.3
Samples: 4
Max nTPM: 41.3
Min nTPM: 29.6
RHH5313_R3680
29.6
RHH5221_R3593
33.8
RHH5250_R3622
40.5
RHH5279_R3651
41.3
Intermediate monocyte nTPM: 50.9
Samples: 4
Max nTPM: 68.1
Min nTPM: 40.3
RHH5314_R3681
40.3
RHH5222_R3594
41.2
RHH5251_R3623
54.0
RHH5280_R3652
68.1
Non-classical monocyte nTPM: 70.6
Samples: 4
Max nTPM: 91.9
Min nTPM: 61.1
RHH5315_R3682
61.1
RHH5223_R3595
61.9
RHH5252_R3624
91.9
RHH5281_R3653
67.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.3
Schmiedel sample id
TPM
Classical monocyte TPM: 27.8
Samples: 91
Max TPM: 36.0
Min TPM: 20.2
MONOCYTES_1
36.0
MONOCYTES_2
34.9
MONOCYTES_3
34.7
MONOCYTES_4
34.2
MONOCYTES_5
34.1
MONOCYTES_6
33.6
MONOCYTES_7
33.3
MONOCYTES_8
32.7
MONOCYTES_9
32.7
MONOCYTES_10
32.7
MONOCYTES_11
32.6
MONOCYTES_12
32.6
MONOCYTES_13
32.5
MONOCYTES_14
32.4
MONOCYTES_15
32.4
MONOCYTES_16
32.3
MONOCYTES_17
31.8
MONOCYTES_18
31.3
MONOCYTES_19
31.1
MONOCYTES_20
31.0
MONOCYTES_21
30.8
MONOCYTES_22
30.6
MONOCYTES_23
30.5
MONOCYTES_24
30.4
MONOCYTES_25
30.3
MONOCYTES_26
30.2
MONOCYTES_27
30.2
MONOCYTES_28
30.2
MONOCYTES_29
30.0
MONOCYTES_30
30.0
MONOCYTES_31
29.8
MONOCYTES_32
29.8
MONOCYTES_33
29.7
MONOCYTES_34
29.6
MONOCYTES_35
29.5
MONOCYTES_36
29.2
MONOCYTES_37
29.0
MONOCYTES_38
28.9
MONOCYTES_39
28.9
MONOCYTES_40
28.6
MONOCYTES_41
28.5
MONOCYTES_42
28.2
MONOCYTES_43
27.9
MONOCYTES_44
27.9
MONOCYTES_45
27.9
MONOCYTES_46
27.0
MONOCYTES_47
26.8
MONOCYTES_48
26.8
MONOCYTES_49
26.7
MONOCYTES_50
26.7
MONOCYTES_51
26.6
MONOCYTES_52
26.6
MONOCYTES_53
26.5
MONOCYTES_54
26.4
MONOCYTES_55
26.1
MONOCYTES_56
26.0
MONOCYTES_57
25.9
MONOCYTES_58
25.7
MONOCYTES_59
25.6
MONOCYTES_60
25.5
MONOCYTES_61
25.5
MONOCYTES_62
25.3
MONOCYTES_63
25.2
MONOCYTES_64
25.2
MONOCYTES_65
25.2
MONOCYTES_66
25.0
MONOCYTES_67
25.0
MONOCYTES_68
24.9
MONOCYTES_69
24.9
MONOCYTES_70
24.7
MONOCYTES_71
24.7
MONOCYTES_72
24.7
MONOCYTES_73
24.6
MONOCYTES_74
24.4
MONOCYTES_75
24.4
MONOCYTES_76
24.2
MONOCYTES_77
24.0
MONOCYTES_78
23.9
MONOCYTES_79
23.6
MONOCYTES_80
23.4
MONOCYTES_81
23.3
MONOCYTES_82
23.3
MONOCYTES_83
23.3
MONOCYTES_84
23.0
MONOCYTES_85
22.8
MONOCYTES_86
22.8
MONOCYTES_87
22.5
MONOCYTES_88
21.9
MONOCYTES_89
21.5
MONOCYTES_90
21.2
MONOCYTES_91
20.2
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Non-classical monocyte TPM: 71.3
Samples: 90
Max TPM: 115.9
Min TPM: 49.6
M2_1
115.9
M2_2
106.1
M2_3
101.8
M2_4
100.2
M2_5
95.5
M2_6
94.9
M2_7
94.1
M2_8
93.6
M2_9
90.1
M2_10
89.7
M2_11
86.2
M2_12
86.0
M2_13
84.4
M2_14
81.7
M2_15
81.5
M2_16
81.5
M2_17
81.2
M2_18
80.2
M2_19
79.4
M2_20
79.3
M2_21
78.5
M2_22
77.2
M2_23
77.0
M2_24
76.6
M2_25
75.7
M2_26
74.6
M2_27
74.2
M2_28
74.1
M2_29
74.1
M2_30
73.7
M2_31
73.2
M2_32
73.2
M2_33
73.0
M2_34
73.0
M2_35
72.8
M2_36
72.5
M2_37
72.4
M2_38
72.1
M2_39
71.7
M2_40
71.5
M2_41
71.0
M2_42
70.2
M2_43
70.1
M2_44
70.0
M2_45
69.9
M2_46
69.6
M2_47
69.0
M2_48
67.9
M2_49
67.4
M2_50
67.3
M2_51
67.2
M2_52
67.2
M2_53
67.1
M2_54
66.8
M2_55
66.6
M2_56
66.2
M2_57
65.8
M2_58
65.4
M2_59
65.2
M2_60
64.8
M2_61
63.9
M2_62
63.5
M2_63
63.1
M2_64
63.1
M2_65
63.0
M2_66
63.0
M2_67
62.3
M2_68
62.1
M2_69
61.7
M2_70
61.3
M2_71
60.9
M2_72
60.9
M2_73
60.9
M2_74
60.6
M2_75
58.7
M2_76
58.6
M2_77
58.5
M2_78
58.4
M2_79
58.3
M2_80
58.2
M2_81
58.1
M2_82
57.6
M2_83
56.6
M2_84
56.4
M2_85
56.3
M2_86
55.6
M2_87
55.3
M2_88
54.8
M2_89
54.7
M2_90
49.6
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