MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:86.7 nTPM
HPA Brain:113.4 nTPM
GTEx:86.7 nTPM
FANTOM5:173.6 Scaled Tags Per Million
Pig:101.1 nTPM
Mouse:197.8 nTPM
Allen mouse:12.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 113.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.8
2666 Male, age 74, left hemisphere 123.7
2411 Female, age 72, unknown 99.2
2019 Male, age 18, unknown 96.0
2219 Male, age 76, both hemispheres 88.9
1827 Male, age 72, unknown 85.1
1870 Female, age 42, unknown 84.8
1833 Male, age 53, unknown 83.9
1830 Male, age 51, unknown 81.5
2586 Male, age 75, left hemisphere 74.6
2828 Female, age 72, unknown 70.5
Dorsal raphe nucleus
nTPM: 94.5
1828 Male, age 53, unknown 106.7
2047 Male, age 72, unknown 105.5
2298 Female, age 72, unknown 98.4
2750 Male, age 76, both hemispheres 91.2
2016 Female, age 72, unknown 70.9
Inferior colliculus
nTPM: 85.0
2849 Male, age 72, unknown 88.6
2097 Female, age 72, unknown 85.7
1848 Female, age 42, unknown 85.5
1890 Male, age 53, unknown 80.2
Median raphe nucleus
nTPM: 106.7
2220 Male, age 76, midline 106.7
Periaquaductal grey, anterior
nTPM: 80.4
1947 Male, age 18, unknown 87.8
2502 Female, age 75, unknown 78.1
1795 Male, age 51, unknown 75.2
Periaquaductal grey, dorsal
nTPM: 73.7
2850 Male, age 76, both hemispheres 82.0
1840 Male, age 53, unknown 76.0
2464 Female, age 72, unknown 69.3
1831 Male, age 72, unknown 67.6
Periaquaductal grey, lateral
nTPM: 71.1
2140 Male, age 76, both hemispheres 74.6
2272 Male, age 74, both hemispheres 74.5
2053 Male, age 18, unknown 64.1
Pretectal area
nTPM: 85.7
2007 Male, age 72, unknown 107.7
1817 Female, age 42, unknown 105.1
1944 Female, age 72, unknown 94.5
1816 Male, age 51, unknown 91.7
1815 Male, age 53, unknown 86.6
2224 Female, age 72, unknown 86.5
2667 Female, age 75, unknown 82.0
2825 Male, age 18, unknown 78.3
2316 Male, age 76, right hemisphere 75.5
2407 Male, age 75, both hemispheres 71.4
2273 Male, age 74, both hemispheres 63.7
Red nucleus
nTPM: 82.7
1821 Female, age 72, unknown 105.9
2725 Female, age 75, unknown 89.3
2785 Male, age 18, unknown 89.3
1865 Male, age 51, unknown 81.6
2503 Female, age 72, unknown 81.6
1954 Female, age 42, unknown 81.4
2584 Male, age 75, left hemisphere 78.7
2227 Male, age 72, unknown 78.1
2769 Male, age 72, unknown 77.1
1904 Male, age 53, unknown 76.8
2823 Male, age 76, right hemisphere 76.6
2588 Male, age 74, left hemisphere 75.8
Substantia nigra
nTPM: 113.4
1916 Female, age 42, unknown 174.6
1851 Male, age 51, unknown 128.9
1941 Male, age 53, unknown 127.8
2241 Male, age 72, unknown 122.5
2699 Male, age 18, unknown 109.5
1889 Female, age 72, unknown 108.2
2409 Female, age 72, unknown 105.5
2665 Male, age 74, both hemispheres 97.9
2583 Male, age 75, right hemisphere 84.1
2590 Female, age 75, unknown 75.2
Superior colliculus
nTPM: 76.2
2668 Female, age 75, unknown 107.9
1895 Male, age 76, right hemisphere 86.9
1796 Male, age 53, unknown 80.6
1839 Male, age 51, unknown 79.8
2087 Female, age 72, unknown 78.6
2587 Male, age 74, left hemisphere 77.1
2261 Male, age 18, unknown 69.8
1913 Female, age 42, unknown 64.3
2664 Male, age 75, both hemispheres 59.8
1995 Male, age 72, unknown 57.0
Ventral tegmental area
nTPM: 101.0
1915 Female, age 42, unknown 120.9
2410 Female, age 72, unknown 119.8
2218 Male, age 76, both hemispheres 107.5
2223 Female, age 72, unknown 92.7
1942 Male, age 51, unknown 86.0
2021 Male, age 53, unknown 79.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 86.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.7
Samples: 183

Max nTPM: 217.7
Min nTPM: 47.6
Std nTPM: 32.9
Median nTPM: 76.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 217.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 212.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 195.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 188.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 171.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 168.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 165.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 165.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 158.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 153.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 152.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 173.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.6
FF:10158-103A5 76 years, female 173.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 101.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 78.4
Samples: 4

Max nTPM: 104.4
Min nTPM: 52.0
Sample A Female 104.4
Sample B Female 62.7
Sample C Male 94.5
Sample D Male 52.0
Midbrain
nTPM: 94.8
Samples: 4

Max nTPM: 125.8
Min nTPM: 66.1
Sample A Female 85.0
Sample B Female 66.1
Sample C Male 125.8
Sample D Male 102.2
Periaqueductal gray
nTPM: 66.4
Samples: 3

Max nTPM: 81.4
Min nTPM: 56.6
Sample B Female 61.3
Sample C Male 81.4
Sample D Male 56.6
Superior colliculi
nTPM: 101.1
Samples: 4

Max nTPM: 135.3
Min nTPM: 62.9
Sample A Female 113.4
Sample B Female 62.9
Sample C Male 135.3
Sample D Male 92.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 197.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 197.8
Samples: 4

Max nTPM: 204.9
Min nTPM: 190.4
Sample A Male 204.9
Sample B Male 197.3
Sample C Female 190.4
Sample D Female 198.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
69873403 Antisense, RP_050512_01_B11, Mouse strain C57BL/6J (56 days, male) 12.3

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