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  • SARS1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:73.3 nTPM
HPA Brain:93.8 nTPM
GTEx:73.3 nTPM
FANTOM5:217.1 Scaled Tags Per Million
Pig:86.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 89.5
2194 Female, age 79, both hemispheres 104.5
1981 Female, age 72, midline 95.9
2565 Male, age 75, midline 90.4
2816 Male, age 47, midline 79.0
2048 Male, age 55, midline 77.9
Cervical spinal cord, dorsal horn
nTPM: 93.8
2173 Female, age 72, unknown 119.5
2296 Male, age 66, both hemispheres 110.5
2069 Male, age 47, both hemispheres 91.6
2721 Male, age 90, both hemispheres 82.7
2297 Male, age 75, both hemispheres 81.5
1877 Male, age 55, unknown 76.6
Cervical spinal cord, ventral horn
nTPM: 88.9
2068 Male, age 55, unknown 104.7
2820 Female, age 79, both hemispheres 100.6
2098 Female, age 72, unknown 90.4
2480 Male, age 75, both hemispheres 87.2
2809 Male, age 90, both hemispheres 82.8
2295 Male, age 66, both hemispheres 67.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 73.3
Samples: 204

Max nTPM: 164.1
Min nTPM: 43.1
Std nTPM: 16.2
Median nTPM: 70.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 164.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 152.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 131.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 123.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 118.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 109.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 107.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 106.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 103.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 103.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 103.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 101.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 101.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 98.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 97.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 96.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 95.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 94.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 92.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 91.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 89.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 89.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 89.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 89.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 89.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 88.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 87.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 87.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 86.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 85.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 85.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 84.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 84.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 84.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 82.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 82.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 82.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 81.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 81.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 81.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 81.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 81.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 81.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 80.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 80.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 80.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 80.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 80.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 80.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 80.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 79.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 79.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 79.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 78.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 78.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 78.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 78.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 77.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 77.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 77.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 77.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 76.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 76.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 76.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 76.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 75.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 75.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 75.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 75.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 75.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 75.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 75.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 74.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 73.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 73.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 73.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 73.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 73.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 73.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 73.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 73.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 73.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 73.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 73.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 72.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 72.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 72.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 72.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 72.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 72.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 72.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 71.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 71.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 71.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 71.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 70.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 70.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 70.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 70.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 70.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 70.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 70.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 69.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 69.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 69.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 69.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 69.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 69.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 69.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 69.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 69.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 69.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 69.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 69.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 68.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 68.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 68.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 68.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 68.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 68.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 67.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 67.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 67.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 67.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 67.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 67.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 67.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 67.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 66.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 66.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 66.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 66.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 66.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 66.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 66.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 66.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 65.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 65.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 65.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 65.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 65.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 65.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 65.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 65.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 65.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 65.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 65.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 65.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 65.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 64.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 64.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 64.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 64.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 64.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 64.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 63.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 63.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 63.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 63.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 63.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 63.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 63.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 63.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 61.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 61.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 61.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 61.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 61.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 61.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 60.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 60.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 60.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 60.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 60.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 60.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 60.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 59.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 58.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 58.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 58.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 58.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 57.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 57.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 57.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 56.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 56.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 56.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 56.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 56.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 55.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 55.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 55.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 54.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 54.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 54.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 53.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 52.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 51.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 50.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 49.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 48.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 44.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 43.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 43.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

217.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 217.1
FF:10181-103D1 60 years, female 263.7
FF:10159-103A6 76 years, female 170.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 70.4
Samples: 4

Max nTPM: 84.7
Min nTPM: 57.0
Sample A Female 84.7
Sample B Female 57.0
Sample C Male 57.7
Sample D Male 82.2
Ventral spinal cord
nTPM: 86.0
Samples: 4

Max nTPM: 93.2
Min nTPM: 73.4
Sample A Female 86.5
Sample B Female 90.8
Sample C Male 93.2
Sample D Male 73.4

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