A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.1
nTPM
Monaco:
45.3
nTPM
Schmiedel:
46.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.1
HPA sample
nTPM
Memory B-cell nTPM: 3.1
Samples: 6
Max nTPM: 7.2
Min nTPM: 0.3
P10809_1017
4.7
P10809_1025
2.5
P10809_1044
0.3
P10809_1063
2.1
P10809_1092
1.5
P10809_1105
7.2
Naive B-cell nTPM: 3.0
Samples: 6
Max nTPM: 5.3
Min nTPM: 1.6
P10809_1011
2.5
P10809_1029
3.6
P10809_1048
2.4
P10809_1067
2.5
P10809_1091
1.6
P10809_1104
5.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 43.3
Samples: 4
Max nTPM: 50.3
Min nTPM: 34.8
RHH5310_R3677
34.8
RHH5218_R3590
46.7
RHH5247_R3619
41.2
RHH5276_R3648
50.3
Naive B-cell nTPM: 37.9
Samples: 4
Max nTPM: 51.9
Min nTPM: 24.4
RHH5308_R3675
24.4
RHH5216_R3588
51.9
RHH5245_R3617
45.3
RHH5274_R3646
30.2
Non-switched memory B-cell nTPM: 32.5
Samples: 4
Max nTPM: 38.5
Min nTPM: 27.6
RHH5309_R3676
31.4
RHH5217_R3589
38.5
RHH5246_R3618
27.6
RHH5275_R3647
32.3
Plasmablast nTPM: 45.3
Samples: 4
Max nTPM: 59.7
Min nTPM: 29.9
RHH5312_R3679
51.4
RHH5220_R3592
29.9
RHH5249_R3621
40.2
RHH5278_R3650
59.7
Switched memory B-cell nTPM: 38.4
Samples: 4
Max nTPM: 55.9
Min nTPM: 23.6
RHH5311_R3678
27.2
RHH5219_R3591
23.6
RHH5248_R3620
55.9
RHH5277_R3649
46.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.1
Schmiedel sample id
TPM
Naive B-cell TPM: 46.1
Samples: 91
Max TPM: 81.0
Min TPM: 26.7
B_CELL_NAIVE_1
81.0
B_CELL_NAIVE_2
79.8
B_CELL_NAIVE_3
71.7
B_CELL_NAIVE_4
68.5
B_CELL_NAIVE_5
68.0
B_CELL_NAIVE_6
65.3
B_CELL_NAIVE_7
63.5
B_CELL_NAIVE_8
62.0
B_CELL_NAIVE_9
60.0
B_CELL_NAIVE_10
59.3
B_CELL_NAIVE_11
58.5
B_CELL_NAIVE_12
58.4
B_CELL_NAIVE_13
55.3
B_CELL_NAIVE_14
55.2
B_CELL_NAIVE_15
54.6
B_CELL_NAIVE_16
54.1
B_CELL_NAIVE_17
53.8
B_CELL_NAIVE_18
51.6
B_CELL_NAIVE_19
50.6
B_CELL_NAIVE_20
50.6
B_CELL_NAIVE_21
50.1
B_CELL_NAIVE_22
49.4
B_CELL_NAIVE_23
49.2
B_CELL_NAIVE_24
49.1
B_CELL_NAIVE_25
49.0
B_CELL_NAIVE_26
48.7
B_CELL_NAIVE_27
48.6
B_CELL_NAIVE_28
48.3
B_CELL_NAIVE_29
48.2
B_CELL_NAIVE_30
48.0
B_CELL_NAIVE_31
47.5
B_CELL_NAIVE_32
47.4
B_CELL_NAIVE_33
47.3
B_CELL_NAIVE_34
46.9
B_CELL_NAIVE_35
46.9
B_CELL_NAIVE_36
46.8
B_CELL_NAIVE_37
46.8
B_CELL_NAIVE_38
46.7
B_CELL_NAIVE_39
46.5
B_CELL_NAIVE_40
46.2
B_CELL_NAIVE_41
46.0
B_CELL_NAIVE_42
45.7
B_CELL_NAIVE_43
45.5
B_CELL_NAIVE_44
44.6
B_CELL_NAIVE_45
43.9
B_CELL_NAIVE_46
43.8
B_CELL_NAIVE_47
43.7
B_CELL_NAIVE_48
43.3
B_CELL_NAIVE_49
43.1
B_CELL_NAIVE_50
42.4
B_CELL_NAIVE_51
42.3
B_CELL_NAIVE_52
42.2
B_CELL_NAIVE_53
42.1
B_CELL_NAIVE_54
42.1
B_CELL_NAIVE_55
41.9
B_CELL_NAIVE_56
41.7
B_CELL_NAIVE_57
41.6
B_CELL_NAIVE_58
41.3
B_CELL_NAIVE_59
41.2
B_CELL_NAIVE_60
41.1
B_CELL_NAIVE_61
41.1
B_CELL_NAIVE_62
40.9
B_CELL_NAIVE_63
40.9
B_CELL_NAIVE_64
40.8
B_CELL_NAIVE_65
40.5
B_CELL_NAIVE_66
40.5
B_CELL_NAIVE_67
40.1
B_CELL_NAIVE_68
39.9
B_CELL_NAIVE_69
39.9
B_CELL_NAIVE_70
39.1
B_CELL_NAIVE_71
38.5
B_CELL_NAIVE_72
38.3
B_CELL_NAIVE_73
38.3
B_CELL_NAIVE_74
37.8
B_CELL_NAIVE_75
37.8
B_CELL_NAIVE_76
37.4
B_CELL_NAIVE_77
37.3
B_CELL_NAIVE_78
37.1
B_CELL_NAIVE_79
37.1
B_CELL_NAIVE_80
36.9
B_CELL_NAIVE_81
36.9
B_CELL_NAIVE_82
36.2
B_CELL_NAIVE_83
36.2
B_CELL_NAIVE_84
35.7
B_CELL_NAIVE_85
35.5
B_CELL_NAIVE_86
35.4
B_CELL_NAIVE_87
35.1
B_CELL_NAIVE_88
34.8
B_CELL_NAIVE_89
33.2
B_CELL_NAIVE_90
27.6
B_CELL_NAIVE_91
26.7
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