A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.8
nTPM
Monaco:
32.8
nTPM
Schmiedel:
27.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.8
HPA sample
nTPM
NK-cell nTPM: 5.9
Samples: 6
Max nTPM: 18.1
Min nTPM: 2.6
P10809_1013
4.5
P10809_1033
2.6
P10809_1052
3.6
P10809_1071
3.0
P10809_1093
18.1
P10809_1103
3.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.8
Monaco sample
nTPM
NK-cell nTPM: 32.8
Samples: 4
Max nTPM: 48.5
Min nTPM: 24.4
RHH5316_R3683
24.4
RHH5224_R3596
48.5
RHH5253_R3625
30.5
RHH5282_R3654
27.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.8
Schmiedel sample id
TPM
NK-cell TPM: 27.8
Samples: 90
Max TPM: 49.0
Min TPM: 14.7
NK_1
49.0
NK_2
48.3
NK_3
44.3
NK_4
42.7
NK_5
42.1
NK_6
41.2
NK_7
40.5
NK_8
39.3
NK_9
38.9
NK_10
36.7
NK_11
36.2
NK_12
35.9
NK_13
34.8
NK_14
34.3
NK_15
34.3
NK_16
33.7
NK_17
33.3
NK_18
33.2
NK_19
32.9
NK_20
32.8
NK_21
32.6
NK_22
32.5
NK_23
32.0
NK_24
32.0
NK_25
31.7
NK_26
31.6
NK_27
30.8
NK_28
30.3
NK_29
30.3
NK_30
30.2
NK_31
29.9
NK_32
29.4
NK_33
29.0
NK_34
28.7
NK_35
28.5
NK_36
28.4
NK_37
28.0
NK_38
27.9
NK_39
27.8
NK_40
27.7
NK_41
27.7
NK_42
27.5
NK_43
27.5
NK_44
27.4
NK_45
27.2
NK_46
27.2
NK_47
26.9
NK_48
26.6
NK_49
26.2
NK_50
26.0
NK_51
25.8
NK_52
25.6
NK_53
25.4
NK_54
25.3
NK_55
25.3
NK_56
25.2
NK_57
24.9
NK_58
24.9
NK_59
24.7
NK_60
24.4
NK_61
24.1
NK_62
24.1
NK_63
23.8
NK_64
23.6
NK_65
23.6
NK_66
23.1
NK_67
22.6
NK_68
22.6
NK_69
22.3
NK_70
22.3
NK_71
22.1
NK_72
21.8
NK_73
21.5
NK_74
21.4
NK_75
21.4
NK_76
21.2
NK_77
21.1
NK_78
20.7
NK_79
20.5
NK_80
20.0
NK_81
19.2
NK_82
18.9
NK_83
18.9
NK_84
18.7
NK_85
18.5
NK_86
17.7
NK_87
17.1
NK_88
16.4
NK_89
16.3
NK_90
14.7
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