A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.6
nTPM
Monaco:
33.0
nTPM
Schmiedel:
23.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.6
HPA sample
nTPM
Classical monocyte nTPM: 1.8
Samples: 6
Max nTPM: 2.6
Min nTPM: 1.2
P10809_1003
2.4
P10809_1020
1.2
P10809_1039
1.3
P10809_1058
1.5
P10809_1080
1.9
P10809_1107
2.6
Intermediate monocyte nTPM: 2.3
Samples: 6
Max nTPM: 4.9
Min nTPM: 0.1
P10809_1004
2.7
P10809_1023
1.2
P10809_1042
0.1
P10809_1061
3.1
P10809_1081
2.0
P10809_1108
4.9
Non-classical monocyte nTPM: 2.6
Samples: 5
Max nTPM: 4.0
Min nTPM: 1.2
P10809_1005
2.2
P10809_1053
4.0
P10809_1072
1.2
P10809_1082
2.2
P10809_1109
3.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.0
Monaco sample
nTPM
Classical monocyte nTPM: 30.9
Samples: 4
Max nTPM: 45.6
Min nTPM: 24.4
RHH5313_R3680
27.6
RHH5221_R3593
45.6
RHH5250_R3622
25.9
RHH5279_R3651
24.4
Intermediate monocyte nTPM: 26.8
Samples: 4
Max nTPM: 33.8
Min nTPM: 16.2
RHH5314_R3681
27.2
RHH5222_R3594
33.8
RHH5251_R3623
30.0
RHH5280_R3652
16.2
Non-classical monocyte nTPM: 33.0
Samples: 4
Max nTPM: 54.5
Min nTPM: 21.8
RHH5315_R3682
25.5
RHH5223_R3595
54.5
RHH5252_R3624
21.8
RHH5281_R3653
30.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.3
Schmiedel sample id
TPM
Classical monocyte TPM: 17.0
Samples: 91
Max TPM: 22.6
Min TPM: 12.2
MONOCYTES_1
22.6
MONOCYTES_2
22.3
MONOCYTES_3
20.9
MONOCYTES_4
20.5
MONOCYTES_5
20.2
MONOCYTES_6
20.0
MONOCYTES_7
19.9
MONOCYTES_8
19.9
MONOCYTES_9
19.7
MONOCYTES_10
19.7
MONOCYTES_11
19.6
MONOCYTES_12
19.6
MONOCYTES_13
19.3
MONOCYTES_14
19.3
MONOCYTES_15
19.2
MONOCYTES_16
19.2
MONOCYTES_17
19.1
MONOCYTES_18
19.1
MONOCYTES_19
19.0
MONOCYTES_20
18.8
MONOCYTES_21
18.8
MONOCYTES_22
18.7
MONOCYTES_23
18.7
MONOCYTES_24
18.7
MONOCYTES_25
18.6
MONOCYTES_26
18.5
MONOCYTES_27
18.3
MONOCYTES_28
18.2
MONOCYTES_29
18.1
MONOCYTES_30
18.1
MONOCYTES_31
18.0
MONOCYTES_32
18.0
MONOCYTES_33
18.0
MONOCYTES_34
17.9
MONOCYTES_35
17.9
MONOCYTES_36
17.8
MONOCYTES_37
17.7
MONOCYTES_38
17.7
MONOCYTES_39
17.5
MONOCYTES_40
17.4
MONOCYTES_41
17.4
MONOCYTES_42
17.3
MONOCYTES_43
17.3
MONOCYTES_44
17.3
MONOCYTES_45
17.1
MONOCYTES_46
17.1
MONOCYTES_47
16.9
MONOCYTES_48
16.8
MONOCYTES_49
16.8
MONOCYTES_50
16.8
MONOCYTES_51
16.6
MONOCYTES_52
16.5
MONOCYTES_53
16.3
MONOCYTES_54
16.3
MONOCYTES_55
16.2
MONOCYTES_56
16.0
MONOCYTES_57
16.0
MONOCYTES_58
16.0
MONOCYTES_59
15.9
MONOCYTES_60
15.9
MONOCYTES_61
15.9
MONOCYTES_62
15.8
MONOCYTES_63
15.8
MONOCYTES_64
15.7
MONOCYTES_65
15.7
MONOCYTES_66
15.6
MONOCYTES_67
15.6
MONOCYTES_68
15.5
MONOCYTES_69
15.3
MONOCYTES_70
15.3
MONOCYTES_71
15.3
MONOCYTES_72
15.1
MONOCYTES_73
15.1
MONOCYTES_74
14.8
MONOCYTES_75
14.8
MONOCYTES_76
14.7
MONOCYTES_77
14.5
MONOCYTES_78
14.5
MONOCYTES_79
14.4
MONOCYTES_80
14.4
MONOCYTES_81
14.4
MONOCYTES_82
14.4
MONOCYTES_83
14.2
MONOCYTES_84
14.2
MONOCYTES_85
13.9
MONOCYTES_86
13.7
MONOCYTES_87
13.7
MONOCYTES_88
13.6
MONOCYTES_89
13.0
MONOCYTES_90
12.6
MONOCYTES_91
12.2
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Non-classical monocyte TPM: 23.3
Samples: 90
Max TPM: 35.3
Min TPM: 11.5
M2_1
35.3
M2_2
35.1
M2_3
34.1
M2_4
33.8
M2_5
33.5
M2_6
32.6
M2_7
32.6
M2_8
31.8
M2_9
31.4
M2_10
30.8
M2_11
30.7
M2_12
30.4
M2_13
30.0
M2_14
28.0
M2_15
27.6
M2_16
27.5
M2_17
27.5
M2_18
25.9
M2_19
25.7
M2_20
25.6
M2_21
25.5
M2_22
25.3
M2_23
25.3
M2_24
25.1
M2_25
25.1
M2_26
24.9
M2_27
24.9
M2_28
24.8
M2_29
24.7
M2_30
24.5
M2_31
24.4
M2_32
24.2
M2_33
24.1
M2_34
24.1
M2_35
23.8
M2_36
23.7
M2_37
23.7
M2_38
23.6
M2_39
23.3
M2_40
23.3
M2_41
23.2
M2_42
23.1
M2_43
23.0
M2_44
22.9
M2_45
22.7
M2_46
22.5
M2_47
22.3
M2_48
21.9
M2_49
21.9
M2_50
21.7
M2_51
21.6
M2_52
21.4
M2_53
21.4
M2_54
21.4
M2_55
21.1
M2_56
21.1
M2_57
21.0
M2_58
21.0
M2_59
20.8
M2_60
20.8
M2_61
20.7
M2_62
20.6
M2_63
20.6
M2_64
20.5
M2_65
20.4
M2_66
20.4
M2_67
19.6
M2_68
19.6
M2_69
19.6
M2_70
19.5
M2_71
19.1
M2_72
19.1
M2_73
19.0
M2_74
19.0
M2_75
19.0
M2_76
18.9
M2_77
18.7
M2_78
18.7
M2_79
18.7
M2_80
18.5
M2_81
18.4
M2_82
18.4
M2_83
18.1
M2_84
17.8
M2_85
17.7
M2_86
17.4
M2_87
17.1
M2_88
17.0
M2_89
15.6
M2_90
11.5
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