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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • IMMUNE

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  • RNF19A
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:15.6 nTPM
Monaco:147.4 nTPM
Schmiedel:178.0 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

15.6
HPA sample nTPM
Memory B-cell
nTPM: 15.6
Samples: 6

Max nTPM: 22.3
Min nTPM: 5.2
P10809_1017 18.9
P10809_1025 14.2
P10809_1044 5.2
P10809_1063 22.3
P10809_1092 14.8
P10809_1105 18.0
Naive B-cell
nTPM: 14.0
Samples: 6

Max nTPM: 26.8
Min nTPM: 2.0
P10809_1011 14.6
P10809_1029 13.9
P10809_1048 2.0
P10809_1067 26.8
P10809_1091 13.7
P10809_1104 13.0

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

147.4
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 135.1
Samples: 4

Max nTPM: 159.5
Min nTPM: 117.4
RHH5310_R3677 117.4
RHH5218_R3590 137.9
RHH5247_R3619 159.5
RHH5276_R3648 125.6
Naive B-cell
nTPM: 124.2
Samples: 4

Max nTPM: 179.5
Min nTPM: 87.1
RHH5308_R3675 87.1
RHH5216_R3588 101.0
RHH5245_R3617 179.5
RHH5274_R3646 129.1
Non-switched memory B-cell
nTPM: 137.1
Samples: 4

Max nTPM: 161.2
Min nTPM: 116.5
RHH5309_R3676 122.4
RHH5217_R3589 161.2
RHH5246_R3618 116.5
RHH5275_R3647 148.3
Plasmablast
nTPM: 89.3
Samples: 4

Max nTPM: 128.0
Min nTPM: 66.4
RHH5312_R3679 128.0
RHH5220_R3592 70.7
RHH5249_R3621 66.4
RHH5278_R3650 91.9
Switched memory B-cell
nTPM: 147.4
Samples: 4

Max nTPM: 176.8
Min nTPM: 131.1
RHH5311_R3678 133.8
RHH5219_R3591 147.8
RHH5248_R3620 131.1
RHH5277_R3649 176.8

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

178.0
Schmiedel sample id TPM
Naive B-cell
TPM: 178.0
Samples: 91

Max TPM: 281.1
Min TPM: 101.3
B_CELL_NAIVE_1 281.1
B_CELL_NAIVE_2 247.9
B_CELL_NAIVE_3 247.8
B_CELL_NAIVE_4 245.2
B_CELL_NAIVE_5 238.4
B_CELL_NAIVE_6 229.2
B_CELL_NAIVE_7 227.9
B_CELL_NAIVE_8 226.9
B_CELL_NAIVE_9 226.4
B_CELL_NAIVE_10 224.9
B_CELL_NAIVE_11 223.3
B_CELL_NAIVE_12 222.2
B_CELL_NAIVE_13 218.6
B_CELL_NAIVE_14 210.1
B_CELL_NAIVE_15 200.9
B_CELL_NAIVE_16 200.8
B_CELL_NAIVE_17 200.0
B_CELL_NAIVE_18 199.6
B_CELL_NAIVE_19 198.9
B_CELL_NAIVE_20 197.7
B_CELL_NAIVE_21 197.1
B_CELL_NAIVE_22 196.4
B_CELL_NAIVE_23 193.8
B_CELL_NAIVE_24 193.5
B_CELL_NAIVE_25 192.1
B_CELL_NAIVE_26 191.4
B_CELL_NAIVE_27 190.3
B_CELL_NAIVE_28 190.2
B_CELL_NAIVE_29 190.0
B_CELL_NAIVE_30 187.1
B_CELL_NAIVE_31 186.0
B_CELL_NAIVE_32 185.9
B_CELL_NAIVE_33 185.6
B_CELL_NAIVE_34 185.2
B_CELL_NAIVE_35 184.9
B_CELL_NAIVE_36 184.7
B_CELL_NAIVE_37 183.9
B_CELL_NAIVE_38 183.4
B_CELL_NAIVE_39 181.0
B_CELL_NAIVE_40 180.0
B_CELL_NAIVE_41 179.4
B_CELL_NAIVE_42 179.2
B_CELL_NAIVE_43 177.8
B_CELL_NAIVE_44 177.0
B_CELL_NAIVE_45 176.8
B_CELL_NAIVE_46 175.5
B_CELL_NAIVE_47 174.7
B_CELL_NAIVE_48 172.8
B_CELL_NAIVE_49 171.3
B_CELL_NAIVE_50 171.1
B_CELL_NAIVE_51 171.1
B_CELL_NAIVE_52 170.8
B_CELL_NAIVE_53 170.4
B_CELL_NAIVE_54 170.3
B_CELL_NAIVE_55 168.5
B_CELL_NAIVE_56 168.5
B_CELL_NAIVE_57 168.3
B_CELL_NAIVE_58 165.3
B_CELL_NAIVE_59 165.1
B_CELL_NAIVE_60 162.3
B_CELL_NAIVE_61 161.4
B_CELL_NAIVE_62 161.4
B_CELL_NAIVE_63 161.1
B_CELL_NAIVE_64 159.0
B_CELL_NAIVE_65 157.9
B_CELL_NAIVE_66 157.1
B_CELL_NAIVE_67 157.0
B_CELL_NAIVE_68 156.1
B_CELL_NAIVE_69 155.9
B_CELL_NAIVE_70 155.4
B_CELL_NAIVE_71 155.1
B_CELL_NAIVE_72 155.1
B_CELL_NAIVE_73 152.6
B_CELL_NAIVE_74 151.4
B_CELL_NAIVE_75 150.6
B_CELL_NAIVE_76 149.6
B_CELL_NAIVE_77 149.4
B_CELL_NAIVE_78 148.5
B_CELL_NAIVE_79 148.5
B_CELL_NAIVE_80 146.6
B_CELL_NAIVE_81 145.2
B_CELL_NAIVE_82 140.5
B_CELL_NAIVE_83 140.2
B_CELL_NAIVE_84 139.2
B_CELL_NAIVE_85 138.5
B_CELL_NAIVE_86 135.3
B_CELL_NAIVE_87 131.2
B_CELL_NAIVE_88 130.6
B_CELL_NAIVE_89 124.8
B_CELL_NAIVE_90 113.8
B_CELL_NAIVE_91 101.3
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