A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.6
nTPM
Monaco:
147.4
nTPM
Schmiedel:
178.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.6
HPA sample
nTPM
Memory B-cell nTPM: 15.6
Samples: 6
Max nTPM: 22.3
Min nTPM: 5.2
P10809_1017
18.9
P10809_1025
14.2
P10809_1044
5.2
P10809_1063
22.3
P10809_1092
14.8
P10809_1105
18.0
Naive B-cell nTPM: 14.0
Samples: 6
Max nTPM: 26.8
Min nTPM: 2.0
P10809_1011
14.6
P10809_1029
13.9
P10809_1048
2.0
P10809_1067
26.8
P10809_1091
13.7
P10809_1104
13.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
147.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 135.1
Samples: 4
Max nTPM: 159.5
Min nTPM: 117.4
RHH5310_R3677
117.4
RHH5218_R3590
137.9
RHH5247_R3619
159.5
RHH5276_R3648
125.6
Naive B-cell nTPM: 124.2
Samples: 4
Max nTPM: 179.5
Min nTPM: 87.1
RHH5308_R3675
87.1
RHH5216_R3588
101.0
RHH5245_R3617
179.5
RHH5274_R3646
129.1
Non-switched memory B-cell nTPM: 137.1
Samples: 4
Max nTPM: 161.2
Min nTPM: 116.5
RHH5309_R3676
122.4
RHH5217_R3589
161.2
RHH5246_R3618
116.5
RHH5275_R3647
148.3
Plasmablast nTPM: 89.3
Samples: 4
Max nTPM: 128.0
Min nTPM: 66.4
RHH5312_R3679
128.0
RHH5220_R3592
70.7
RHH5249_R3621
66.4
RHH5278_R3650
91.9
Switched memory B-cell nTPM: 147.4
Samples: 4
Max nTPM: 176.8
Min nTPM: 131.1
RHH5311_R3678
133.8
RHH5219_R3591
147.8
RHH5248_R3620
131.1
RHH5277_R3649
176.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
178.0
Schmiedel sample id
TPM
Naive B-cell TPM: 178.0
Samples: 91
Max TPM: 281.1
Min TPM: 101.3
B_CELL_NAIVE_1
281.1
B_CELL_NAIVE_2
247.9
B_CELL_NAIVE_3
247.8
B_CELL_NAIVE_4
245.2
B_CELL_NAIVE_5
238.4
B_CELL_NAIVE_6
229.2
B_CELL_NAIVE_7
227.9
B_CELL_NAIVE_8
226.9
B_CELL_NAIVE_9
226.4
B_CELL_NAIVE_10
224.9
B_CELL_NAIVE_11
223.3
B_CELL_NAIVE_12
222.2
B_CELL_NAIVE_13
218.6
B_CELL_NAIVE_14
210.1
B_CELL_NAIVE_15
200.9
B_CELL_NAIVE_16
200.8
B_CELL_NAIVE_17
200.0
B_CELL_NAIVE_18
199.6
B_CELL_NAIVE_19
198.9
B_CELL_NAIVE_20
197.7
B_CELL_NAIVE_21
197.1
B_CELL_NAIVE_22
196.4
B_CELL_NAIVE_23
193.8
B_CELL_NAIVE_24
193.5
B_CELL_NAIVE_25
192.1
B_CELL_NAIVE_26
191.4
B_CELL_NAIVE_27
190.3
B_CELL_NAIVE_28
190.2
B_CELL_NAIVE_29
190.0
B_CELL_NAIVE_30
187.1
B_CELL_NAIVE_31
186.0
B_CELL_NAIVE_32
185.9
B_CELL_NAIVE_33
185.6
B_CELL_NAIVE_34
185.2
B_CELL_NAIVE_35
184.9
B_CELL_NAIVE_36
184.7
B_CELL_NAIVE_37
183.9
B_CELL_NAIVE_38
183.4
B_CELL_NAIVE_39
181.0
B_CELL_NAIVE_40
180.0
B_CELL_NAIVE_41
179.4
B_CELL_NAIVE_42
179.2
B_CELL_NAIVE_43
177.8
B_CELL_NAIVE_44
177.0
B_CELL_NAIVE_45
176.8
B_CELL_NAIVE_46
175.5
B_CELL_NAIVE_47
174.7
B_CELL_NAIVE_48
172.8
B_CELL_NAIVE_49
171.3
B_CELL_NAIVE_50
171.1
B_CELL_NAIVE_51
171.1
B_CELL_NAIVE_52
170.8
B_CELL_NAIVE_53
170.4
B_CELL_NAIVE_54
170.3
B_CELL_NAIVE_55
168.5
B_CELL_NAIVE_56
168.5
B_CELL_NAIVE_57
168.3
B_CELL_NAIVE_58
165.3
B_CELL_NAIVE_59
165.1
B_CELL_NAIVE_60
162.3
B_CELL_NAIVE_61
161.4
B_CELL_NAIVE_62
161.4
B_CELL_NAIVE_63
161.1
B_CELL_NAIVE_64
159.0
B_CELL_NAIVE_65
157.9
B_CELL_NAIVE_66
157.1
B_CELL_NAIVE_67
157.0
B_CELL_NAIVE_68
156.1
B_CELL_NAIVE_69
155.9
B_CELL_NAIVE_70
155.4
B_CELL_NAIVE_71
155.1
B_CELL_NAIVE_72
155.1
B_CELL_NAIVE_73
152.6
B_CELL_NAIVE_74
151.4
B_CELL_NAIVE_75
150.6
B_CELL_NAIVE_76
149.6
B_CELL_NAIVE_77
149.4
B_CELL_NAIVE_78
148.5
B_CELL_NAIVE_79
148.5
B_CELL_NAIVE_80
146.6
B_CELL_NAIVE_81
145.2
B_CELL_NAIVE_82
140.5
B_CELL_NAIVE_83
140.2
B_CELL_NAIVE_84
139.2
B_CELL_NAIVE_85
138.5
B_CELL_NAIVE_86
135.3
B_CELL_NAIVE_87
131.2
B_CELL_NAIVE_88
130.6
B_CELL_NAIVE_89
124.8
B_CELL_NAIVE_90
113.8
B_CELL_NAIVE_91
101.3
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.