A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.3
nTPM
Monaco:
70.7
nTPM
Schmiedel:
68.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.3
HPA sample
nTPM
Classical monocyte nTPM: 8.6
Samples: 6
Max nTPM: 14.2
Min nTPM: 5.2
P10809_1003
5.2
P10809_1020
7.1
P10809_1039
5.5
P10809_1058
14.2
P10809_1080
11.3
P10809_1107
8.4
Intermediate monocyte nTPM: 6.8
Samples: 6
Max nTPM: 10.4
Min nTPM: 3.7
P10809_1004
5.5
P10809_1023
6.9
P10809_1042
3.7
P10809_1061
8.9
P10809_1081
10.4
P10809_1108
5.3
Non-classical monocyte nTPM: 14.3
Samples: 5
Max nTPM: 39.7
Min nTPM: 5.1
P10809_1005
5.1
P10809_1053
6.2
P10809_1072
39.7
P10809_1082
15.4
P10809_1109
5.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.7
Monaco sample
nTPM
Classical monocyte nTPM: 70.8
Samples: 4
Max nTPM: 92.8
Min nTPM: 58.6
RHH5313_R3680
58.6
RHH5221_R3593
59.9
RHH5250_R3622
92.8
RHH5279_R3651
71.7
Intermediate monocyte nTPM: 63.4
Samples: 4
Max nTPM: 75.5
Min nTPM: 53.5
RHH5314_R3681
61.2
RHH5222_R3594
63.4
RHH5251_R3623
53.5
RHH5280_R3652
75.5
Non-classical monocyte nTPM: 60.0
Samples: 4
Max nTPM: 71.6
Min nTPM: 49.2
RHH5315_R3682
49.2
RHH5223_R3595
71.6
RHH5252_R3624
50.6
RHH5281_R3653
68.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.7
Schmiedel sample id
TPM
Classical monocyte TPM: 45.2
Samples: 91
Max TPM: 59.7
Min TPM: 35.7
MONOCYTES_1
59.7
MONOCYTES_2
59.0
MONOCYTES_3
57.1
MONOCYTES_4
56.9
MONOCYTES_5
54.8
MONOCYTES_6
54.2
MONOCYTES_7
54.0
MONOCYTES_8
53.7
MONOCYTES_9
53.2
MONOCYTES_10
53.1
MONOCYTES_11
52.5
MONOCYTES_12
52.5
MONOCYTES_13
52.3
MONOCYTES_14
51.9
MONOCYTES_15
51.5
MONOCYTES_16
51.5
MONOCYTES_17
51.1
MONOCYTES_18
50.8
MONOCYTES_19
49.9
MONOCYTES_20
49.7
MONOCYTES_21
49.6
MONOCYTES_22
49.2
MONOCYTES_23
48.9
MONOCYTES_24
48.9
MONOCYTES_25
48.7
MONOCYTES_26
48.2
MONOCYTES_27
47.1
MONOCYTES_28
47.1
MONOCYTES_29
47.1
MONOCYTES_30
47.0
MONOCYTES_31
47.0
MONOCYTES_32
46.8
MONOCYTES_33
46.6
MONOCYTES_34
46.3
MONOCYTES_35
46.0
MONOCYTES_36
45.9
MONOCYTES_37
45.8
MONOCYTES_38
45.8
MONOCYTES_39
45.5
MONOCYTES_40
44.8
MONOCYTES_41
44.8
MONOCYTES_42
44.6
MONOCYTES_43
44.2
MONOCYTES_44
44.1
MONOCYTES_45
44.0
MONOCYTES_46
44.0
MONOCYTES_47
43.8
MONOCYTES_48
43.6
MONOCYTES_49
43.5
MONOCYTES_50
43.4
MONOCYTES_51
43.3
MONOCYTES_52
43.3
MONOCYTES_53
43.2
MONOCYTES_54
43.1
MONOCYTES_55
43.1
MONOCYTES_56
43.1
MONOCYTES_57
43.1
MONOCYTES_58
42.9
MONOCYTES_59
42.8
MONOCYTES_60
42.7
MONOCYTES_61
42.6
MONOCYTES_62
42.6
MONOCYTES_63
41.8
MONOCYTES_64
41.8
MONOCYTES_65
41.5
MONOCYTES_66
41.3
MONOCYTES_67
41.2
MONOCYTES_68
41.1
MONOCYTES_69
41.1
MONOCYTES_70
41.1
MONOCYTES_71
40.9
MONOCYTES_72
40.9
MONOCYTES_73
40.5
MONOCYTES_74
40.1
MONOCYTES_75
39.9
MONOCYTES_76
39.9
MONOCYTES_77
39.9
MONOCYTES_78
39.9
MONOCYTES_79
39.8
MONOCYTES_80
39.6
MONOCYTES_81
39.6
MONOCYTES_82
39.3
MONOCYTES_83
38.7
MONOCYTES_84
38.7
MONOCYTES_85
38.4
MONOCYTES_86
38.0
MONOCYTES_87
37.4
MONOCYTES_88
37.4
MONOCYTES_89
37.3
MONOCYTES_90
37.3
MONOCYTES_91
35.7
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Non-classical monocyte TPM: 68.7
Samples: 90
Max TPM: 113.5
Min TPM: 46.3
M2_1
113.5
M2_2
97.0
M2_3
94.9
M2_4
91.2
M2_5
91.0
M2_6
90.0
M2_7
88.0
M2_8
88.0
M2_9
86.7
M2_10
85.4
M2_11
85.0
M2_12
84.9
M2_13
81.2
M2_14
79.5
M2_15
78.9
M2_16
78.6
M2_17
78.4
M2_18
77.9
M2_19
77.0
M2_20
76.8
M2_21
76.0
M2_22
74.6
M2_23
74.5
M2_24
74.1
M2_25
73.9
M2_26
73.8
M2_27
73.8
M2_28
73.7
M2_29
73.7
M2_30
73.6
M2_31
72.9
M2_32
72.1
M2_33
72.1
M2_34
71.4
M2_35
71.1
M2_36
71.0
M2_37
69.9
M2_38
69.8
M2_39
69.5
M2_40
69.4
M2_41
69.3
M2_42
69.0
M2_43
68.9
M2_44
68.8
M2_45
68.6
M2_46
67.2
M2_47
67.2
M2_48
67.0
M2_49
66.7
M2_50
66.3
M2_51
66.0
M2_52
65.6
M2_53
65.4
M2_54
65.1
M2_55
64.3
M2_56
64.3
M2_57
63.8
M2_58
63.5
M2_59
63.4
M2_60
63.3
M2_61
63.2
M2_62
62.9
M2_63
62.1
M2_64
61.6
M2_65
61.3
M2_66
60.5
M2_67
60.0
M2_68
59.8
M2_69
59.6
M2_70
58.3
M2_71
57.6
M2_72
57.0
M2_73
56.4
M2_74
56.4
M2_75
56.1
M2_76
55.1
M2_77
54.9
M2_78
54.6
M2_79
54.6
M2_80
54.5
M2_81
54.2
M2_82
53.2
M2_83
52.9
M2_84
52.3
M2_85
51.8
M2_86
51.4
M2_87
51.3
M2_88
51.3
M2_89
50.4
M2_90
46.3
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