A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.2
nTPM
Monaco:
175.9
nTPM
Schmiedel:
148.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.2
HPA sample
nTPM
NK-cell nTPM: 6.2
Samples: 6
Max nTPM: 11.4
Min nTPM: 0.0
P10809_1013
11.4
P10809_1033
7.7
P10809_1052
5.2
P10809_1071
7.3
P10809_1093
0.0
P10809_1103
5.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
175.9
Monaco sample
nTPM
NK-cell nTPM: 175.9
Samples: 4
Max nTPM: 242.6
Min nTPM: 122.1
RHH5316_R3683
122.1
RHH5224_R3596
137.8
RHH5253_R3625
242.6
RHH5282_R3654
200.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
148.9
Schmiedel sample id
TPM
NK-cell TPM: 148.9
Samples: 90
Max TPM: 287.9
Min TPM: 77.9
NK_1
287.9
NK_2
280.0
NK_3
259.2
NK_4
258.2
NK_5
252.3
NK_6
249.6
NK_7
241.1
NK_8
233.9
NK_9
226.2
NK_10
221.6
NK_11
219.6
NK_12
210.2
NK_13
208.7
NK_14
206.3
NK_15
202.5
NK_16
198.6
NK_17
194.2
NK_18
191.0
NK_19
189.9
NK_20
189.5
NK_21
188.5
NK_22
188.0
NK_23
187.9
NK_24
183.9
NK_25
174.1
NK_26
172.8
NK_27
163.2
NK_28
163.1
NK_29
162.0
NK_30
159.7
NK_31
159.4
NK_32
155.3
NK_33
155.1
NK_34
150.7
NK_35
150.6
NK_36
149.7
NK_37
149.5
NK_38
147.7
NK_39
147.6
NK_40
145.4
NK_41
145.4
NK_42
144.5
NK_43
143.4
NK_44
140.0
NK_45
133.6
NK_46
130.0
NK_47
128.9
NK_48
128.7
NK_49
127.8
NK_50
126.6
NK_51
126.1
NK_52
125.5
NK_53
123.0
NK_54
122.5
NK_55
121.5
NK_56
120.7
NK_57
118.7
NK_58
118.0
NK_59
117.5
NK_60
117.2
NK_61
117.0
NK_62
116.5
NK_63
116.1
NK_64
112.0
NK_65
111.0
NK_66
110.9
NK_67
110.8
NK_68
110.6
NK_69
110.3
NK_70
109.9
NK_71
109.5
NK_72
108.4
NK_73
106.8
NK_74
106.7
NK_75
104.3
NK_76
102.3
NK_77
101.9
NK_78
99.5
NK_79
98.3
NK_80
98.2
NK_81
95.7
NK_82
95.3
NK_83
95.3
NK_84
94.8
NK_85
93.2
NK_86
92.6
NK_87
90.1
NK_88
87.1
NK_89
83.6
NK_90
77.9
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