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BETA
  • SUMMARY

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  • BRAIN

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  • GABARAPL2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:215.8 nTPM
Monaco:315.3 nTPM
Schmiedel:123.3 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

215.8
HPA sample nTPM
Memory B-cell
nTPM: 215.8
Samples: 6

Max nTPM: 251.0
Min nTPM: 164.8
P10809_1017 164.8
P10809_1025 250.5
P10809_1044 225.9
P10809_1063 205.9
P10809_1092 196.9
P10809_1105 251.0
Naive B-cell
nTPM: 200.1
Samples: 6

Max nTPM: 434.3
Min nTPM: 97.7
P10809_1011 97.7
P10809_1029 171.7
P10809_1048 434.3
P10809_1067 147.0
P10809_1091 170.8
P10809_1104 179.1

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

315.3
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 315.3
Samples: 4

Max nTPM: 427.9
Min nTPM: 218.7
RHH5310_R3677 427.9
RHH5218_R3590 218.7
RHH5247_R3619 379.5
RHH5276_R3648 235.2
Naive B-cell
nTPM: 209.3
Samples: 4

Max nTPM: 260.6
Min nTPM: 122.2
RHH5308_R3675 260.6
RHH5216_R3588 242.6
RHH5245_R3617 122.2
RHH5274_R3646 211.7
Non-switched memory B-cell
nTPM: 230.2
Samples: 4

Max nTPM: 275.4
Min nTPM: 169.9
RHH5309_R3676 275.4
RHH5217_R3589 233.5
RHH5246_R3618 242.0
RHH5275_R3647 169.9
Plasmablast
nTPM: 185.4
Samples: 4

Max nTPM: 236.0
Min nTPM: 151.7
RHH5312_R3679 196.3
RHH5220_R3592 157.6
RHH5249_R3621 236.0
RHH5278_R3650 151.7
Switched memory B-cell
nTPM: 298.4
Samples: 4

Max nTPM: 411.7
Min nTPM: 205.2
RHH5311_R3678 411.7
RHH5219_R3591 315.1
RHH5248_R3620 261.6
RHH5277_R3649 205.2

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

123.3
Schmiedel sample id TPM
Naive B-cell
TPM: 123.3
Samples: 91

Max TPM: 203.6
Min TPM: 73.4
B_CELL_NAIVE_1 203.6
B_CELL_NAIVE_2 200.0
B_CELL_NAIVE_3 178.5
B_CELL_NAIVE_4 178.1
B_CELL_NAIVE_5 170.1
B_CELL_NAIVE_6 160.6
B_CELL_NAIVE_7 153.8
B_CELL_NAIVE_8 149.7
B_CELL_NAIVE_9 148.5
B_CELL_NAIVE_10 148.1
B_CELL_NAIVE_11 146.5
B_CELL_NAIVE_12 144.9
B_CELL_NAIVE_13 144.4
B_CELL_NAIVE_14 141.4
B_CELL_NAIVE_15 141.0
B_CELL_NAIVE_16 140.8
B_CELL_NAIVE_17 139.1
B_CELL_NAIVE_18 136.1
B_CELL_NAIVE_19 135.8
B_CELL_NAIVE_20 135.3
B_CELL_NAIVE_21 135.0
B_CELL_NAIVE_22 134.3
B_CELL_NAIVE_23 133.5
B_CELL_NAIVE_24 133.1
B_CELL_NAIVE_25 132.9
B_CELL_NAIVE_26 132.3
B_CELL_NAIVE_27 132.2
B_CELL_NAIVE_28 132.0
B_CELL_NAIVE_29 131.5
B_CELL_NAIVE_30 130.6
B_CELL_NAIVE_31 129.6
B_CELL_NAIVE_32 129.3
B_CELL_NAIVE_33 129.3
B_CELL_NAIVE_34 128.4
B_CELL_NAIVE_35 128.2
B_CELL_NAIVE_36 128.1
B_CELL_NAIVE_37 126.5
B_CELL_NAIVE_38 126.1
B_CELL_NAIVE_39 126.1
B_CELL_NAIVE_40 125.4
B_CELL_NAIVE_41 123.7
B_CELL_NAIVE_42 122.8
B_CELL_NAIVE_43 121.4
B_CELL_NAIVE_44 121.1
B_CELL_NAIVE_45 121.0
B_CELL_NAIVE_46 120.4
B_CELL_NAIVE_47 119.6
B_CELL_NAIVE_48 119.6
B_CELL_NAIVE_49 117.9
B_CELL_NAIVE_50 117.3
B_CELL_NAIVE_51 116.1
B_CELL_NAIVE_52 116.1
B_CELL_NAIVE_53 115.6
B_CELL_NAIVE_54 115.0
B_CELL_NAIVE_55 114.8
B_CELL_NAIVE_56 114.5
B_CELL_NAIVE_57 114.3
B_CELL_NAIVE_58 113.9
B_CELL_NAIVE_59 113.6
B_CELL_NAIVE_60 113.1
B_CELL_NAIVE_61 112.7
B_CELL_NAIVE_62 112.6
B_CELL_NAIVE_63 112.5
B_CELL_NAIVE_64 112.2
B_CELL_NAIVE_65 111.6
B_CELL_NAIVE_66 110.5
B_CELL_NAIVE_67 109.9
B_CELL_NAIVE_68 109.5
B_CELL_NAIVE_69 109.2
B_CELL_NAIVE_70 108.9
B_CELL_NAIVE_71 108.6
B_CELL_NAIVE_72 108.0
B_CELL_NAIVE_73 107.7
B_CELL_NAIVE_74 106.8
B_CELL_NAIVE_75 106.6
B_CELL_NAIVE_76 106.2
B_CELL_NAIVE_77 105.7
B_CELL_NAIVE_78 104.4
B_CELL_NAIVE_79 101.8
B_CELL_NAIVE_80 101.5
B_CELL_NAIVE_81 101.1
B_CELL_NAIVE_82 100.3
B_CELL_NAIVE_83 99.7
B_CELL_NAIVE_84 96.7
B_CELL_NAIVE_85 95.6
B_CELL_NAIVE_86 95.0
B_CELL_NAIVE_87 91.9
B_CELL_NAIVE_88 86.7
B_CELL_NAIVE_89 86.5
B_CELL_NAIVE_90 78.0
B_CELL_NAIVE_91 73.4
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