A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
215.8
nTPM
Monaco:
315.3
nTPM
Schmiedel:
123.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
215.8
HPA sample
nTPM
Memory B-cell nTPM: 215.8
Samples: 6
Max nTPM: 251.0
Min nTPM: 164.8
P10809_1017
164.8
P10809_1025
250.5
P10809_1044
225.9
P10809_1063
205.9
P10809_1092
196.9
P10809_1105
251.0
Naive B-cell nTPM: 200.1
Samples: 6
Max nTPM: 434.3
Min nTPM: 97.7
P10809_1011
97.7
P10809_1029
171.7
P10809_1048
434.3
P10809_1067
147.0
P10809_1091
170.8
P10809_1104
179.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
315.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 315.3
Samples: 4
Max nTPM: 427.9
Min nTPM: 218.7
RHH5310_R3677
427.9
RHH5218_R3590
218.7
RHH5247_R3619
379.5
RHH5276_R3648
235.2
Naive B-cell nTPM: 209.3
Samples: 4
Max nTPM: 260.6
Min nTPM: 122.2
RHH5308_R3675
260.6
RHH5216_R3588
242.6
RHH5245_R3617
122.2
RHH5274_R3646
211.7
Non-switched memory B-cell nTPM: 230.2
Samples: 4
Max nTPM: 275.4
Min nTPM: 169.9
RHH5309_R3676
275.4
RHH5217_R3589
233.5
RHH5246_R3618
242.0
RHH5275_R3647
169.9
Plasmablast nTPM: 185.4
Samples: 4
Max nTPM: 236.0
Min nTPM: 151.7
RHH5312_R3679
196.3
RHH5220_R3592
157.6
RHH5249_R3621
236.0
RHH5278_R3650
151.7
Switched memory B-cell nTPM: 298.4
Samples: 4
Max nTPM: 411.7
Min nTPM: 205.2
RHH5311_R3678
411.7
RHH5219_R3591
315.1
RHH5248_R3620
261.6
RHH5277_R3649
205.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
123.3
Schmiedel sample id
TPM
Naive B-cell TPM: 123.3
Samples: 91
Max TPM: 203.6
Min TPM: 73.4
B_CELL_NAIVE_1
203.6
B_CELL_NAIVE_2
200.0
B_CELL_NAIVE_3
178.5
B_CELL_NAIVE_4
178.1
B_CELL_NAIVE_5
170.1
B_CELL_NAIVE_6
160.6
B_CELL_NAIVE_7
153.8
B_CELL_NAIVE_8
149.7
B_CELL_NAIVE_9
148.5
B_CELL_NAIVE_10
148.1
B_CELL_NAIVE_11
146.5
B_CELL_NAIVE_12
144.9
B_CELL_NAIVE_13
144.4
B_CELL_NAIVE_14
141.4
B_CELL_NAIVE_15
141.0
B_CELL_NAIVE_16
140.8
B_CELL_NAIVE_17
139.1
B_CELL_NAIVE_18
136.1
B_CELL_NAIVE_19
135.8
B_CELL_NAIVE_20
135.3
B_CELL_NAIVE_21
135.0
B_CELL_NAIVE_22
134.3
B_CELL_NAIVE_23
133.5
B_CELL_NAIVE_24
133.1
B_CELL_NAIVE_25
132.9
B_CELL_NAIVE_26
132.3
B_CELL_NAIVE_27
132.2
B_CELL_NAIVE_28
132.0
B_CELL_NAIVE_29
131.5
B_CELL_NAIVE_30
130.6
B_CELL_NAIVE_31
129.6
B_CELL_NAIVE_32
129.3
B_CELL_NAIVE_33
129.3
B_CELL_NAIVE_34
128.4
B_CELL_NAIVE_35
128.2
B_CELL_NAIVE_36
128.1
B_CELL_NAIVE_37
126.5
B_CELL_NAIVE_38
126.1
B_CELL_NAIVE_39
126.1
B_CELL_NAIVE_40
125.4
B_CELL_NAIVE_41
123.7
B_CELL_NAIVE_42
122.8
B_CELL_NAIVE_43
121.4
B_CELL_NAIVE_44
121.1
B_CELL_NAIVE_45
121.0
B_CELL_NAIVE_46
120.4
B_CELL_NAIVE_47
119.6
B_CELL_NAIVE_48
119.6
B_CELL_NAIVE_49
117.9
B_CELL_NAIVE_50
117.3
B_CELL_NAIVE_51
116.1
B_CELL_NAIVE_52
116.1
B_CELL_NAIVE_53
115.6
B_CELL_NAIVE_54
115.0
B_CELL_NAIVE_55
114.8
B_CELL_NAIVE_56
114.5
B_CELL_NAIVE_57
114.3
B_CELL_NAIVE_58
113.9
B_CELL_NAIVE_59
113.6
B_CELL_NAIVE_60
113.1
B_CELL_NAIVE_61
112.7
B_CELL_NAIVE_62
112.6
B_CELL_NAIVE_63
112.5
B_CELL_NAIVE_64
112.2
B_CELL_NAIVE_65
111.6
B_CELL_NAIVE_66
110.5
B_CELL_NAIVE_67
109.9
B_CELL_NAIVE_68
109.5
B_CELL_NAIVE_69
109.2
B_CELL_NAIVE_70
108.9
B_CELL_NAIVE_71
108.6
B_CELL_NAIVE_72
108.0
B_CELL_NAIVE_73
107.7
B_CELL_NAIVE_74
106.8
B_CELL_NAIVE_75
106.6
B_CELL_NAIVE_76
106.2
B_CELL_NAIVE_77
105.7
B_CELL_NAIVE_78
104.4
B_CELL_NAIVE_79
101.8
B_CELL_NAIVE_80
101.5
B_CELL_NAIVE_81
101.1
B_CELL_NAIVE_82
100.3
B_CELL_NAIVE_83
99.7
B_CELL_NAIVE_84
96.7
B_CELL_NAIVE_85
95.6
B_CELL_NAIVE_86
95.0
B_CELL_NAIVE_87
91.9
B_CELL_NAIVE_88
86.7
B_CELL_NAIVE_89
86.5
B_CELL_NAIVE_90
78.0
B_CELL_NAIVE_91
73.4
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