A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
115.5
nTPM
Monaco:
135.0
nTPM
Schmiedel:
68.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
115.5
HPA sample
nTPM
NK-cell nTPM: 115.5
Samples: 6
Max nTPM: 175.1
Min nTPM: 83.2
P10809_1013
105.7
P10809_1033
175.1
P10809_1052
113.9
P10809_1071
111.2
P10809_1093
83.2
P10809_1103
103.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
135.0
Monaco sample
nTPM
NK-cell nTPM: 135.0
Samples: 4
Max nTPM: 165.9
Min nTPM: 71.2
RHH5316_R3683
158.9
RHH5224_R3596
143.8
RHH5253_R3625
71.2
RHH5282_R3654
165.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.4
Schmiedel sample id
TPM
NK-cell TPM: 68.4
Samples: 90
Max TPM: 93.4
Min TPM: 49.3
NK_1
93.4
NK_2
92.3
NK_3
90.8
NK_4
87.8
NK_5
87.5
NK_6
87.1
NK_7
86.0
NK_8
84.8
NK_9
84.2
NK_10
82.0
NK_11
81.5
NK_12
81.3
NK_13
80.8
NK_14
79.6
NK_15
79.6
NK_16
79.5
NK_17
78.1
NK_18
78.1
NK_19
76.6
NK_20
74.8
NK_21
74.5
NK_22
73.3
NK_23
72.9
NK_24
72.8
NK_25
72.7
NK_26
72.4
NK_27
71.6
NK_28
71.6
NK_29
71.5
NK_30
71.3
NK_31
71.2
NK_32
71.1
NK_33
70.7
NK_34
70.6
NK_35
70.5
NK_36
70.4
NK_37
70.0
NK_38
70.0
NK_39
69.9
NK_40
69.7
NK_41
69.3
NK_42
68.8
NK_43
68.4
NK_44
68.0
NK_45
67.8
NK_46
67.6
NK_47
67.4
NK_48
66.9
NK_49
66.7
NK_50
66.7
NK_51
66.3
NK_52
66.3
NK_53
65.7
NK_54
65.6
NK_55
65.5
NK_56
64.8
NK_57
64.0
NK_58
64.0
NK_59
63.9
NK_60
63.5
NK_61
62.9
NK_62
62.8
NK_63
62.6
NK_64
62.5
NK_65
62.0
NK_66
61.9
NK_67
61.7
NK_68
61.5
NK_69
61.3
NK_70
60.7
NK_71
59.9
NK_72
59.5
NK_73
59.3
NK_74
59.1
NK_75
59.0
NK_76
58.7
NK_77
58.3
NK_78
57.7
NK_79
57.0
NK_80
56.7
NK_81
56.1
NK_82
54.9
NK_83
54.6
NK_84
54.1
NK_85
54.0
NK_86
53.9
NK_87
53.5
NK_88
51.6
NK_89
51.2
NK_90
49.3
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