A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
157.8
nTPM
Monaco:
230.2
nTPM
Schmiedel:
60.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
157.8
HPA sample
nTPM
Classical monocyte nTPM: 149.2
Samples: 6
Max nTPM: 164.4
Min nTPM: 128.5
P10809_1003
164.4
P10809_1020
140.0
P10809_1039
164.3
P10809_1058
128.5
P10809_1080
136.5
P10809_1107
161.7
Intermediate monocyte nTPM: 140.5
Samples: 6
Max nTPM: 183.4
Min nTPM: 93.9
P10809_1004
93.9
P10809_1023
183.4
P10809_1042
158.0
P10809_1061
111.4
P10809_1081
119.0
P10809_1108
177.5
Non-classical monocyte nTPM: 157.8
Samples: 5
Max nTPM: 186.4
Min nTPM: 134.2
P10809_1005
134.2
P10809_1053
151.1
P10809_1072
169.1
P10809_1082
148.2
P10809_1109
186.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
230.2
Monaco sample
nTPM
Classical monocyte nTPM: 230.2
Samples: 4
Max nTPM: 307.4
Min nTPM: 157.6
RHH5313_R3680
195.4
RHH5221_R3593
157.6
RHH5250_R3622
307.4
RHH5279_R3651
260.3
Intermediate monocyte nTPM: 183.0
Samples: 4
Max nTPM: 236.1
Min nTPM: 125.5
RHH5314_R3681
228.1
RHH5222_R3594
125.5
RHH5251_R3623
142.4
RHH5280_R3652
236.1
Non-classical monocyte nTPM: 145.2
Samples: 4
Max nTPM: 210.7
Min nTPM: 96.8
RHH5315_R3682
169.6
RHH5223_R3595
96.8
RHH5252_R3624
103.7
RHH5281_R3653
210.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.5
Schmiedel sample id
TPM
Classical monocyte TPM: 60.5
Samples: 91
Max TPM: 77.5
Min TPM: 43.9
MONOCYTES_1
77.5
MONOCYTES_2
74.2
MONOCYTES_3
74.0
MONOCYTES_4
72.2
MONOCYTES_5
70.8
MONOCYTES_6
69.4
MONOCYTES_7
68.8
MONOCYTES_8
68.7
MONOCYTES_9
68.2
MONOCYTES_10
67.6
MONOCYTES_11
67.6
MONOCYTES_12
67.5
MONOCYTES_13
67.1
MONOCYTES_14
66.9
MONOCYTES_15
65.7
MONOCYTES_16
65.4
MONOCYTES_17
64.9
MONOCYTES_18
64.9
MONOCYTES_19
64.8
MONOCYTES_20
64.8
MONOCYTES_21
64.8
MONOCYTES_22
64.6
MONOCYTES_23
64.2
MONOCYTES_24
64.1
MONOCYTES_25
64.0
MONOCYTES_26
64.0
MONOCYTES_27
63.7
MONOCYTES_28
63.7
MONOCYTES_29
63.6
MONOCYTES_30
63.6
MONOCYTES_31
63.3
MONOCYTES_32
62.7
MONOCYTES_33
62.6
MONOCYTES_34
62.5
MONOCYTES_35
62.5
MONOCYTES_36
62.5
MONOCYTES_37
62.4
MONOCYTES_38
62.2
MONOCYTES_39
62.2
MONOCYTES_40
62.0
MONOCYTES_41
61.9
MONOCYTES_42
61.9
MONOCYTES_43
61.8
MONOCYTES_44
61.7
MONOCYTES_45
61.4
MONOCYTES_46
61.3
MONOCYTES_47
61.3
MONOCYTES_48
60.7
MONOCYTES_49
60.1
MONOCYTES_50
60.0
MONOCYTES_51
59.7
MONOCYTES_52
59.6
MONOCYTES_53
59.4
MONOCYTES_54
59.0
MONOCYTES_55
58.9
MONOCYTES_56
58.8
MONOCYTES_57
58.8
MONOCYTES_58
58.4
MONOCYTES_59
58.3
MONOCYTES_60
58.3
MONOCYTES_61
58.1
MONOCYTES_62
58.1
MONOCYTES_63
57.9
MONOCYTES_64
57.7
MONOCYTES_65
57.0
MONOCYTES_66
56.7
MONOCYTES_67
56.4
MONOCYTES_68
56.3
MONOCYTES_69
56.2
MONOCYTES_70
56.2
MONOCYTES_71
55.9
MONOCYTES_72
55.8
MONOCYTES_73
55.6
MONOCYTES_74
55.3
MONOCYTES_75
54.8
MONOCYTES_76
54.3
MONOCYTES_77
54.1
MONOCYTES_78
53.6
MONOCYTES_79
53.4
MONOCYTES_80
53.3
MONOCYTES_81
53.2
MONOCYTES_82
52.2
MONOCYTES_83
51.8
MONOCYTES_84
51.6
MONOCYTES_85
51.5
MONOCYTES_86
51.5
MONOCYTES_87
50.8
MONOCYTES_88
50.5
MONOCYTES_89
47.9
MONOCYTES_90
45.7
MONOCYTES_91
43.9
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Non-classical monocyte TPM: 58.7
Samples: 90
Max TPM: 81.2
Min TPM: 39.5
M2_1
81.2
M2_2
76.5
M2_3
75.1
M2_4
74.6
M2_5
71.9
M2_6
71.9
M2_7
71.7
M2_8
70.1
M2_9
69.5
M2_10
69.1
M2_11
69.0
M2_12
68.6
M2_13
68.5
M2_14
67.3
M2_15
66.3
M2_16
65.3
M2_17
65.3
M2_18
65.1
M2_19
65.0
M2_20
64.4
M2_21
64.1
M2_22
63.3
M2_23
63.2
M2_24
63.0
M2_25
62.8
M2_26
62.7
M2_27
62.6
M2_28
61.8
M2_29
61.0
M2_30
60.9
M2_31
60.7
M2_32
60.5
M2_33
60.1
M2_34
60.0
M2_35
59.8
M2_36
59.7
M2_37
59.5
M2_38
59.3
M2_39
59.1
M2_40
59.0
M2_41
58.8
M2_42
58.8
M2_43
58.6
M2_44
58.5
M2_45
58.2
M2_46
58.1
M2_47
57.8
M2_48
57.8
M2_49
57.5
M2_50
57.5
M2_51
57.3
M2_52
57.1
M2_53
57.1
M2_54
56.7
M2_55
56.7
M2_56
56.4
M2_57
56.2
M2_58
56.1
M2_59
56.0
M2_60
55.9
M2_61
55.9
M2_62
55.4
M2_63
55.4
M2_64
55.3
M2_65
55.2
M2_66
55.2
M2_67
54.7
M2_68
54.0
M2_69
53.5
M2_70
53.5
M2_71
53.1
M2_72
52.1
M2_73
51.7
M2_74
51.4
M2_75
51.3
M2_76
50.7
M2_77
50.4
M2_78
49.8
M2_79
49.8
M2_80
49.7
M2_81
49.4
M2_82
49.2
M2_83
48.1
M2_84
48.1
M2_85
46.8
M2_86
45.9
M2_87
43.6
M2_88
42.6
M2_89
42.2
M2_90
39.5
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