A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
37.7
nTPM
Monaco:
135.4
nTPM
Schmiedel:
50.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.7
HPA sample
nTPM
Memory B-cell nTPM: 37.7
Samples: 6
Max nTPM: 59.3
Min nTPM: 21.5
P10809_1017
21.5
P10809_1025
38.9
P10809_1044
59.3
P10809_1063
38.8
P10809_1092
39.3
P10809_1105
28.6
Naive B-cell nTPM: 33.9
Samples: 6
Max nTPM: 75.4
Min nTPM: 16.0
P10809_1011
16.0
P10809_1029
23.1
P10809_1048
75.4
P10809_1067
32.1
P10809_1091
27.7
P10809_1104
28.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
135.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 51.0
Samples: 4
Max nTPM: 62.4
Min nTPM: 33.9
RHH5310_R3677
53.3
RHH5218_R3590
54.3
RHH5247_R3619
62.4
RHH5276_R3648
33.9
Naive B-cell nTPM: 37.4
Samples: 4
Max nTPM: 63.4
Min nTPM: 11.0
RHH5308_R3675
30.1
RHH5216_R3588
45.1
RHH5245_R3617
11.0
RHH5274_R3646
63.4
Non-switched memory B-cell nTPM: 41.6
Samples: 4
Max nTPM: 50.8
Min nTPM: 31.8
RHH5309_R3676
42.0
RHH5217_R3589
41.9
RHH5246_R3618
50.8
RHH5275_R3647
31.8
Plasmablast nTPM: 135.4
Samples: 4
Max nTPM: 170.2
Min nTPM: 97.2
RHH5312_R3679
123.7
RHH5220_R3592
150.6
RHH5249_R3621
170.2
RHH5278_R3650
97.2
Switched memory B-cell nTPM: 49.6
Samples: 4
Max nTPM: 67.4
Min nTPM: 38.1
RHH5311_R3678
43.1
RHH5219_R3591
67.4
RHH5248_R3620
38.1
RHH5277_R3649
49.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.9
Schmiedel sample id
TPM
Naive B-cell TPM: 50.9
Samples: 91
Max TPM: 75.2
Min TPM: 31.6
B_CELL_NAIVE_1
75.2
B_CELL_NAIVE_2
68.1
B_CELL_NAIVE_3
67.3
B_CELL_NAIVE_4
65.2
B_CELL_NAIVE_5
65.2
B_CELL_NAIVE_6
65.0
B_CELL_NAIVE_7
64.9
B_CELL_NAIVE_8
63.4
B_CELL_NAIVE_9
63.1
B_CELL_NAIVE_10
62.2
B_CELL_NAIVE_11
61.8
B_CELL_NAIVE_12
60.7
B_CELL_NAIVE_13
60.5
B_CELL_NAIVE_14
60.0
B_CELL_NAIVE_15
58.7
B_CELL_NAIVE_16
58.5
B_CELL_NAIVE_17
58.4
B_CELL_NAIVE_18
57.1
B_CELL_NAIVE_19
56.8
B_CELL_NAIVE_20
56.7
B_CELL_NAIVE_21
55.2
B_CELL_NAIVE_22
54.6
B_CELL_NAIVE_23
54.5
B_CELL_NAIVE_24
54.4
B_CELL_NAIVE_25
54.4
B_CELL_NAIVE_26
54.1
B_CELL_NAIVE_27
53.9
B_CELL_NAIVE_28
53.7
B_CELL_NAIVE_29
53.7
B_CELL_NAIVE_30
53.7
B_CELL_NAIVE_31
52.7
B_CELL_NAIVE_32
52.3
B_CELL_NAIVE_33
52.1
B_CELL_NAIVE_34
51.9
B_CELL_NAIVE_35
51.8
B_CELL_NAIVE_36
51.6
B_CELL_NAIVE_37
51.2
B_CELL_NAIVE_38
50.9
B_CELL_NAIVE_39
50.9
B_CELL_NAIVE_40
50.7
B_CELL_NAIVE_41
50.7
B_CELL_NAIVE_42
50.6
B_CELL_NAIVE_43
50.6
B_CELL_NAIVE_44
50.5
B_CELL_NAIVE_45
50.1
B_CELL_NAIVE_46
49.9
B_CELL_NAIVE_47
49.9
B_CELL_NAIVE_48
49.4
B_CELL_NAIVE_49
49.3
B_CELL_NAIVE_50
48.8
B_CELL_NAIVE_51
48.5
B_CELL_NAIVE_52
48.3
B_CELL_NAIVE_53
48.1
B_CELL_NAIVE_54
48.0
B_CELL_NAIVE_55
48.0
B_CELL_NAIVE_56
47.7
B_CELL_NAIVE_57
47.6
B_CELL_NAIVE_58
47.5
B_CELL_NAIVE_59
47.3
B_CELL_NAIVE_60
47.2
B_CELL_NAIVE_61
47.0
B_CELL_NAIVE_62
46.7
B_CELL_NAIVE_63
46.7
B_CELL_NAIVE_64
46.5
B_CELL_NAIVE_65
46.4
B_CELL_NAIVE_66
46.4
B_CELL_NAIVE_67
46.3
B_CELL_NAIVE_68
46.1
B_CELL_NAIVE_69
46.1
B_CELL_NAIVE_70
45.9
B_CELL_NAIVE_71
45.1
B_CELL_NAIVE_72
44.8
B_CELL_NAIVE_73
44.7
B_CELL_NAIVE_74
44.6
B_CELL_NAIVE_75
44.3
B_CELL_NAIVE_76
44.2
B_CELL_NAIVE_77
43.9
B_CELL_NAIVE_78
43.8
B_CELL_NAIVE_79
43.7
B_CELL_NAIVE_80
43.5
B_CELL_NAIVE_81
43.5
B_CELL_NAIVE_82
43.4
B_CELL_NAIVE_83
43.3
B_CELL_NAIVE_84
43.1
B_CELL_NAIVE_85
43.0
B_CELL_NAIVE_86
42.1
B_CELL_NAIVE_87
40.7
B_CELL_NAIVE_88
38.4
B_CELL_NAIVE_89
36.6
B_CELL_NAIVE_90
34.8
B_CELL_NAIVE_91
31.6
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The Human Protein Atlas project is funded
