A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
54.4
nTPM
Monaco:
41.7
nTPM
Schmiedel:
83.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.4
HPA sample
nTPM
NK-cell nTPM: 54.4
Samples: 6
Max nTPM: 73.2
Min nTPM: 33.1
P10809_1013
33.1
P10809_1033
73.2
P10809_1052
52.1
P10809_1071
63.5
P10809_1093
40.7
P10809_1103
63.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.7
Monaco sample
nTPM
NK-cell nTPM: 41.7
Samples: 4
Max nTPM: 63.6
Min nTPM: 30.5
RHH5316_R3683
37.4
RHH5224_R3596
63.6
RHH5253_R3625
30.5
RHH5282_R3654
35.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.6
Schmiedel sample id
TPM
NK-cell TPM: 83.6
Samples: 90
Max TPM: 109.5
Min TPM: 56.7
NK_1
109.5
NK_2
107.3
NK_3
105.2
NK_4
105.0
NK_5
101.7
NK_6
101.0
NK_7
101.0
NK_8
99.7
NK_9
99.6
NK_10
99.4
NK_11
99.2
NK_12
99.0
NK_13
97.9
NK_14
97.7
NK_15
96.5
NK_16
95.1
NK_17
94.6
NK_18
94.6
NK_19
93.0
NK_20
92.8
NK_21
92.7
NK_22
92.5
NK_23
92.2
NK_24
91.9
NK_25
91.4
NK_26
91.0
NK_27
91.0
NK_28
90.8
NK_29
90.6
NK_30
90.2
NK_31
90.1
NK_32
90.1
NK_33
90.0
NK_34
89.9
NK_35
88.8
NK_36
87.9
NK_37
87.7
NK_38
87.3
NK_39
86.3
NK_40
86.1
NK_41
85.9
NK_42
85.9
NK_43
85.7
NK_44
84.9
NK_45
84.5
NK_46
84.3
NK_47
83.8
NK_48
83.6
NK_49
82.5
NK_50
81.2
NK_51
81.2
NK_52
80.9
NK_53
80.6
NK_54
80.1
NK_55
80.1
NK_56
80.0
NK_57
79.8
NK_58
79.8
NK_59
79.7
NK_60
79.1
NK_61
78.8
NK_62
78.4
NK_63
77.6
NK_64
76.5
NK_65
76.5
NK_66
75.5
NK_67
75.5
NK_68
75.4
NK_69
74.0
NK_70
74.0
NK_71
73.0
NK_72
72.6
NK_73
72.4
NK_74
71.9
NK_75
71.5
NK_76
71.1
NK_77
70.2
NK_78
69.3
NK_79
67.6
NK_80
67.6
NK_81
67.5
NK_82
66.2
NK_83
66.0
NK_84
65.7
NK_85
62.3
NK_86
60.3
NK_87
59.7
NK_88
59.7
NK_89
58.2
NK_90
56.7
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